This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism slo: Shewanella loihica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
slo00010 Glycolysis / Gluconeogenesis SBML MML
slo00020 Citrate cycle (TCA cycle) SBML MML
slo00030 Pentose phosphate pathway SBML MML
slo00031 (Undocumented) SBML MML
slo00040 Pentose and glucuronate interconversions SBML MML
slo00051 Fructose and mannose metabolism SBML MML
slo00052 Galactose metabolism SBML MML
slo00061 Fatty acid biosynthesis SBML MML
slo00062 Fatty acid elongation in mitochondria SBML MML
slo00071 Fatty acid metabolism SBML MML
slo00072 Synthesis and degradation of ketone bodies SBML MML
slo00100 (Undocumented) SBML MML
slo00120 (Undocumented) SBML MML
slo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
slo00220 (Undocumented) SBML MML
slo00230 Purine metabolism SBML MML
slo00240 Pyrimidine metabolism SBML MML
slo00251 (Undocumented) SBML MML
slo00252 (Undocumented) SBML MML
slo00260 Glycine, serine and threonine metabolism SBML MML
slo00271 (Undocumented) SBML MML
slo00272 (Undocumented) SBML MML
slo00280 Valine, leucine and isoleucine degradation SBML MML
slo00281 Geraniol degradation SBML MML
slo00290 Valine, leucine and isoleucine biosynthesis SBML MML
slo00300 Lysine biosynthesis SBML MML
slo00310 Lysine degradation SBML MML
slo00311 Penicillin and cephalosporin biosynthesis SBML MML
slo00330 Arginine and proline metabolism SBML MML
slo00340 Histidine metabolism SBML MML
slo00350 Tyrosine metabolism SBML MML
slo00360 Phenylalanine metabolism SBML MML
slo00361 gamma-Hexachlorocyclohexane degradation SBML MML
slo00362 (Undocumented) SBML MML
slo00380 Tryptophan metabolism SBML MML
slo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
slo00401 Novobiocin biosynthesis SBML MML
slo00410 beta-Alanine metabolism SBML MML
slo00430 Taurine and hypotaurine metabolism SBML MML
slo00450 Selenoamino acid metabolism SBML MML
slo00460 (Undocumented) SBML MML
slo00471 D-Glutamine and D-glutamate metabolism SBML MML
slo00473 D-Alanine metabolism SBML MML
slo00480 Glutathione metabolism SBML MML
slo00500 Starch and sucrose metabolism SBML MML
slo00520 Amino sugar and nucleotide sugar metabolism SBML MML
slo00521 Streptomycin biosynthesis SBML MML
slo00523 Polyketide sugar unit biosynthesis SBML MML
slo00530 (Undocumented) SBML MML
slo00540 Lipopolysaccharide biosynthesis SBML MML
slo00550 Peptidoglycan biosynthesis SBML MML
slo00561 Glycerolipid metabolism SBML MML
slo00562 Inositol phosphate metabolism SBML MML
slo00564 Glycerophospholipid metabolism SBML MML
slo00590 Arachidonic acid metabolism SBML MML
slo00592 alpha-Linolenic acid metabolism SBML MML
slo00620 Pyruvate metabolism SBML MML
slo00624 1- and 2-Methylnaphthalene degradation SBML MML
slo00626 Naphthalene and anthracene degradation SBML MML
slo00630 Glyoxylate and dicarboxylate metabolism SBML MML
slo00631 1,2-Dichloroethane degradation SBML MML
slo00632 (Undocumented) SBML MML
slo00633 Trinitrotoluene degradation SBML MML
slo00640 Propanoate metabolism SBML MML
slo00641 3-Chloroacrylic acid degradation SBML MML
slo00643 Styrene degradation SBML MML
slo00650 Butanoate metabolism SBML MML
slo00660 C5-Branched dibasic acid metabolism SBML MML
slo00670 One carbon pool by folate SBML MML
slo00680 Methane metabolism SBML MML
slo00710 (Undocumented) SBML MML
slo00720 (Undocumented) SBML MML
slo00730 Thiamine metabolism SBML MML
slo00740 Riboflavin metabolism SBML MML
slo00750 Vitamin B6 metabolism SBML MML
slo00760 Nicotinate and nicotinamide metabolism SBML MML
slo00770 Pantothenate and CoA biosynthesis SBML MML
slo00780 Biotin metabolism SBML MML
slo00785 Lipoic acid metabolism SBML MML
slo00790 Folate biosynthesis SBML MML
slo00860 Porphyrin and chlorophyll metabolism SBML MML
slo00900 Terpenoid backbone biosynthesis SBML MML
slo00903 (Undocumented) SBML MML
slo00910 Nitrogen metabolism SBML MML
slo00920 Sulfur metabolism SBML MML
slo00930 Caprolactam degradation SBML MML
slo00970 Aminoacyl-tRNA biosynthesis SBML MML
slo00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
slo00982 (Undocumented) SBML MML
slo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.