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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sil: Ruegeria pomeroyi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sil00010 Glycolysis / Gluconeogenesis SBML MML
sil00020 Citrate cycle (TCA cycle) SBML MML
sil00030 Pentose phosphate pathway SBML MML
sil00031 (Undocumented) SBML MML
sil00040 Pentose and glucuronate interconversions SBML MML
sil00051 Fructose and mannose metabolism SBML MML
sil00052 Galactose metabolism SBML MML
sil00053 Ascorbate and aldarate metabolism SBML MML
sil00061 Fatty acid biosynthesis SBML MML
sil00062 Fatty acid elongation in mitochondria SBML MML
sil00071 Fatty acid metabolism SBML MML
sil00072 Synthesis and degradation of ketone bodies SBML MML
sil00100 (Undocumented) SBML MML
sil00120 (Undocumented) SBML MML
sil00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sil00220 (Undocumented) SBML MML
sil00230 Purine metabolism SBML MML
sil00240 Pyrimidine metabolism SBML MML
sil00251 (Undocumented) SBML MML
sil00252 (Undocumented) SBML MML
sil00260 Glycine, serine and threonine metabolism SBML MML
sil00271 (Undocumented) SBML MML
sil00272 (Undocumented) SBML MML
sil00280 Valine, leucine and isoleucine degradation SBML MML
sil00281 Geraniol degradation SBML MML
sil00290 Valine, leucine and isoleucine biosynthesis SBML MML
sil00300 Lysine biosynthesis SBML MML
sil00310 Lysine degradation SBML MML
sil00311 Penicillin and cephalosporin biosynthesis SBML MML
sil00330 Arginine and proline metabolism SBML MML
sil00340 Histidine metabolism SBML MML
sil00350 Tyrosine metabolism SBML MML
sil00360 Phenylalanine metabolism SBML MML
sil00361 gamma-Hexachlorocyclohexane degradation SBML MML
sil00362 (Undocumented) SBML MML
sil00380 Tryptophan metabolism SBML MML
sil00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sil00401 Novobiocin biosynthesis SBML MML
sil00410 beta-Alanine metabolism SBML MML
sil00430 Taurine and hypotaurine metabolism SBML MML
sil00450 Selenoamino acid metabolism SBML MML
sil00460 (Undocumented) SBML MML
sil00471 D-Glutamine and D-glutamate metabolism SBML MML
sil00472 D-Arginine and D-ornithine metabolism SBML MML
sil00473 D-Alanine metabolism SBML MML
sil00480 Glutathione metabolism SBML MML
sil00500 Starch and sucrose metabolism SBML MML
sil00521 Streptomycin biosynthesis SBML MML
sil00530 (Undocumented) SBML MML
sil00540 Lipopolysaccharide biosynthesis SBML MML
sil00550 Peptidoglycan biosynthesis SBML MML
sil00561 Glycerolipid metabolism SBML MML
sil00562 Inositol phosphate metabolism SBML MML
sil00564 Glycerophospholipid metabolism SBML MML
sil00590 Arachidonic acid metabolism SBML MML
sil00592 alpha-Linolenic acid metabolism SBML MML
sil00620 Pyruvate metabolism SBML MML
sil00622 Toluene and xylene degradation SBML MML
sil00623 2,4-Dichlorobenzoate degradation SBML MML
sil00624 1- and 2-Methylnaphthalene degradation SBML MML
sil00626 Naphthalene and anthracene degradation SBML MML
sil00627 1,4-Dichlorobenzene degradation SBML MML
sil00628 Fluorene degradation SBML MML
sil00630 Glyoxylate and dicarboxylate metabolism SBML MML
sil00631 1,2-Dichloroethane degradation SBML MML
sil00632 (Undocumented) SBML MML
sil00640 Propanoate metabolism SBML MML
sil00641 3-Chloroacrylic acid degradation SBML MML
sil00642 Ethylbenzene degradation SBML MML
sil00643 Styrene degradation SBML MML
sil00650 Butanoate metabolism SBML MML
sil00660 C5-Branched dibasic acid metabolism SBML MML
sil00670 One carbon pool by folate SBML MML
sil00680 Methane metabolism SBML MML
sil00710 (Undocumented) SBML MML
sil00720 (Undocumented) SBML MML
sil00730 Thiamine metabolism SBML MML
sil00740 Riboflavin metabolism SBML MML
sil00750 Vitamin B6 metabolism SBML MML
sil00760 Nicotinate and nicotinamide metabolism SBML MML
sil00770 Pantothenate and CoA biosynthesis SBML MML
sil00780 Biotin metabolism SBML MML
sil00785 Lipoic acid metabolism SBML MML
sil00790 Folate biosynthesis SBML MML
sil00791 Atrazine degradation SBML MML
sil00860 Porphyrin and chlorophyll metabolism SBML MML
sil00900 Terpenoid backbone biosynthesis SBML MML
sil00903 (Undocumented) SBML MML
sil00910 Nitrogen metabolism SBML MML
sil00920 Sulfur metabolism SBML MML
sil00930 Caprolactam degradation SBML MML
sil00940 (Undocumented) SBML MML
sil00950 (Undocumented) SBML MML
sil00960 (Undocumented) SBML MML
sil00970 Aminoacyl-tRNA biosynthesis SBML MML
sil00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sil00982 (Undocumented) SBML MML
sil00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.