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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism shw: Shewanella sp. W3-18-1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
shw00010 Glycolysis / Gluconeogenesis SBML MML
shw00020 Citrate cycle (TCA cycle) SBML MML
shw00030 Pentose phosphate pathway SBML MML
shw00031 (Undocumented) SBML MML
shw00040 Pentose and glucuronate interconversions SBML MML
shw00051 Fructose and mannose metabolism SBML MML
shw00052 Galactose metabolism SBML MML
shw00053 Ascorbate and aldarate metabolism SBML MML
shw00061 Fatty acid biosynthesis SBML MML
shw00062 Fatty acid elongation in mitochondria SBML MML
shw00071 Fatty acid metabolism SBML MML
shw00072 Synthesis and degradation of ketone bodies SBML MML
shw00100 (Undocumented) SBML MML
shw00120 (Undocumented) SBML MML
shw00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
shw00220 (Undocumented) SBML MML
shw00230 Purine metabolism SBML MML
shw00240 Pyrimidine metabolism SBML MML
shw00251 (Undocumented) SBML MML
shw00252 (Undocumented) SBML MML
shw00260 Glycine, serine and threonine metabolism SBML MML
shw00271 (Undocumented) SBML MML
shw00272 (Undocumented) SBML MML
shw00280 Valine, leucine and isoleucine degradation SBML MML
shw00281 Geraniol degradation SBML MML
shw00290 Valine, leucine and isoleucine biosynthesis SBML MML
shw00300 Lysine biosynthesis SBML MML
shw00310 Lysine degradation SBML MML
shw00330 Arginine and proline metabolism SBML MML
shw00340 Histidine metabolism SBML MML
shw00350 Tyrosine metabolism SBML MML
shw00360 Phenylalanine metabolism SBML MML
shw00361 gamma-Hexachlorocyclohexane degradation SBML MML
shw00363 Bisphenol A degradation SBML MML
shw00364 Fluorobenzoate degradation SBML MML
shw00380 Tryptophan metabolism SBML MML
shw00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
shw00401 Novobiocin biosynthesis SBML MML
shw00410 beta-Alanine metabolism SBML MML
shw00430 Taurine and hypotaurine metabolism SBML MML
shw00450 Selenoamino acid metabolism SBML MML
shw00460 (Undocumented) SBML MML
shw00471 D-Glutamine and D-glutamate metabolism SBML MML
shw00473 D-Alanine metabolism SBML MML
shw00480 Glutathione metabolism SBML MML
shw00500 Starch and sucrose metabolism SBML MML
shw00520 Amino sugar and nucleotide sugar metabolism SBML MML
shw00521 Streptomycin biosynthesis SBML MML
shw00523 Polyketide sugar unit biosynthesis SBML MML
shw00530 (Undocumented) SBML MML
shw00540 Lipopolysaccharide biosynthesis SBML MML
shw00550 Peptidoglycan biosynthesis SBML MML
shw00561 Glycerolipid metabolism SBML MML
shw00562 Inositol phosphate metabolism SBML MML
shw00564 Glycerophospholipid metabolism SBML MML
shw00590 Arachidonic acid metabolism SBML MML
shw00592 alpha-Linolenic acid metabolism SBML MML
shw00620 Pyruvate metabolism SBML MML
shw00624 1- and 2-Methylnaphthalene degradation SBML MML
shw00626 Naphthalene and anthracene degradation SBML MML
shw00627 1,4-Dichlorobenzene degradation SBML MML
shw00630 Glyoxylate and dicarboxylate metabolism SBML MML
shw00632 (Undocumented) SBML MML
shw00633 Trinitrotoluene degradation SBML MML
shw00640 Propanoate metabolism SBML MML
shw00641 3-Chloroacrylic acid degradation SBML MML
shw00643 Styrene degradation SBML MML
shw00650 Butanoate metabolism SBML MML
shw00660 C5-Branched dibasic acid metabolism SBML MML
shw00670 One carbon pool by folate SBML MML
shw00680 Methane metabolism SBML MML
shw00710 (Undocumented) SBML MML
shw00720 (Undocumented) SBML MML
shw00730 Thiamine metabolism SBML MML
shw00740 Riboflavin metabolism SBML MML
shw00750 Vitamin B6 metabolism SBML MML
shw00760 Nicotinate and nicotinamide metabolism SBML MML
shw00770 Pantothenate and CoA biosynthesis SBML MML
shw00780 Biotin metabolism SBML MML
shw00785 Lipoic acid metabolism SBML MML
shw00790 Folate biosynthesis SBML MML
shw00860 Porphyrin and chlorophyll metabolism SBML MML
shw00900 Terpenoid backbone biosynthesis SBML MML
shw00903 (Undocumented) SBML MML
shw00910 Nitrogen metabolism SBML MML
shw00920 Sulfur metabolism SBML MML
shw00930 Caprolactam degradation SBML MML
shw00970 Aminoacyl-tRNA biosynthesis SBML MML
shw00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
shw00982 (Undocumented) SBML MML
shw00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.