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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism shn: Shewanella sp. ANA-3

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
shn00010 Glycolysis / Gluconeogenesis SBML MML
shn00020 Citrate cycle (TCA cycle) SBML MML
shn00030 Pentose phosphate pathway SBML MML
shn00031 (Undocumented) SBML MML
shn00040 Pentose and glucuronate interconversions SBML MML
shn00051 Fructose and mannose metabolism SBML MML
shn00052 Galactose metabolism SBML MML
shn00053 Ascorbate and aldarate metabolism SBML MML
shn00061 Fatty acid biosynthesis SBML MML
shn00062 Fatty acid elongation in mitochondria SBML MML
shn00071 Fatty acid metabolism SBML MML
shn00072 Synthesis and degradation of ketone bodies SBML MML
shn00100 (Undocumented) SBML MML
shn00120 (Undocumented) SBML MML
shn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
shn00220 (Undocumented) SBML MML
shn00230 Purine metabolism SBML MML
shn00240 Pyrimidine metabolism SBML MML
shn00251 (Undocumented) SBML MML
shn00252 (Undocumented) SBML MML
shn00260 Glycine, serine and threonine metabolism SBML MML
shn00271 (Undocumented) SBML MML
shn00272 (Undocumented) SBML MML
shn00280 Valine, leucine and isoleucine degradation SBML MML
shn00281 Geraniol degradation SBML MML
shn00290 Valine, leucine and isoleucine biosynthesis SBML MML
shn00300 Lysine biosynthesis SBML MML
shn00310 Lysine degradation SBML MML
shn00311 Penicillin and cephalosporin biosynthesis SBML MML
shn00330 Arginine and proline metabolism SBML MML
shn00340 Histidine metabolism SBML MML
shn00350 Tyrosine metabolism SBML MML
shn00360 Phenylalanine metabolism SBML MML
shn00361 gamma-Hexachlorocyclohexane degradation SBML MML
shn00362 (Undocumented) SBML MML
shn00363 Bisphenol A degradation SBML MML
shn00364 Fluorobenzoate degradation SBML MML
shn00380 Tryptophan metabolism SBML MML
shn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
shn00401 Novobiocin biosynthesis SBML MML
shn00410 beta-Alanine metabolism SBML MML
shn00430 Taurine and hypotaurine metabolism SBML MML
shn00450 Selenoamino acid metabolism SBML MML
shn00460 (Undocumented) SBML MML
shn00471 D-Glutamine and D-glutamate metabolism SBML MML
shn00473 D-Alanine metabolism SBML MML
shn00480 Glutathione metabolism SBML MML
shn00500 Starch and sucrose metabolism SBML MML
shn00520 Amino sugar and nucleotide sugar metabolism SBML MML
shn00521 Streptomycin biosynthesis SBML MML
shn00523 Polyketide sugar unit biosynthesis SBML MML
shn00530 (Undocumented) SBML MML
shn00540 Lipopolysaccharide biosynthesis SBML MML
shn00550 Peptidoglycan biosynthesis SBML MML
shn00561 Glycerolipid metabolism SBML MML
shn00562 Inositol phosphate metabolism SBML MML
shn00564 Glycerophospholipid metabolism SBML MML
shn00590 Arachidonic acid metabolism SBML MML
shn00592 alpha-Linolenic acid metabolism SBML MML
shn00620 Pyruvate metabolism SBML MML
shn00624 1- and 2-Methylnaphthalene degradation SBML MML
shn00626 Naphthalene and anthracene degradation SBML MML
shn00627 1,4-Dichlorobenzene degradation SBML MML
shn00630 Glyoxylate and dicarboxylate metabolism SBML MML
shn00631 1,2-Dichloroethane degradation SBML MML
shn00632 (Undocumented) SBML MML
shn00633 Trinitrotoluene degradation SBML MML
shn00640 Propanoate metabolism SBML MML
shn00641 3-Chloroacrylic acid degradation SBML MML
shn00643 Styrene degradation SBML MML
shn00650 Butanoate metabolism SBML MML
shn00660 C5-Branched dibasic acid metabolism SBML MML
shn00670 One carbon pool by folate SBML MML
shn00680 Methane metabolism SBML MML
shn00710 (Undocumented) SBML MML
shn00720 (Undocumented) SBML MML
shn00730 Thiamine metabolism SBML MML
shn00740 Riboflavin metabolism SBML MML
shn00750 Vitamin B6 metabolism SBML MML
shn00760 Nicotinate and nicotinamide metabolism SBML MML
shn00770 Pantothenate and CoA biosynthesis SBML MML
shn00780 Biotin metabolism SBML MML
shn00785 Lipoic acid metabolism SBML MML
shn00790 Folate biosynthesis SBML MML
shn00791 Atrazine degradation SBML MML
shn00860 Porphyrin and chlorophyll metabolism SBML MML
shn00900 Terpenoid backbone biosynthesis SBML MML
shn00903 (Undocumented) SBML MML
shn00904 (Undocumented) SBML MML
shn00910 Nitrogen metabolism SBML MML
shn00920 Sulfur metabolism SBML MML
shn00930 Caprolactam degradation SBML MML
shn00960 (Undocumented) SBML MML
shn00970 Aminoacyl-tRNA biosynthesis SBML MML
shn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
shn00982 (Undocumented) SBML MML
shn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.