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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sfv: Shigella flexneri 8401 (serotype 5b)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sfv00010 Glycolysis / Gluconeogenesis SBML MML
sfv00020 Citrate cycle (TCA cycle) SBML MML
sfv00030 Pentose phosphate pathway SBML MML
sfv00040 Pentose and glucuronate interconversions SBML MML
sfv00051 Fructose and mannose metabolism SBML MML
sfv00052 Galactose metabolism SBML MML
sfv00053 Ascorbate and aldarate metabolism SBML MML
sfv00061 Fatty acid biosynthesis SBML MML
sfv00062 Fatty acid elongation in mitochondria SBML MML
sfv00071 Fatty acid metabolism SBML MML
sfv00100 (Undocumented) SBML MML
sfv00120 (Undocumented) SBML MML
sfv00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sfv00220 (Undocumented) SBML MML
sfv00230 Purine metabolism SBML MML
sfv00240 Pyrimidine metabolism SBML MML
sfv00251 (Undocumented) SBML MML
sfv00252 (Undocumented) SBML MML
sfv00260 Glycine, serine and threonine metabolism SBML MML
sfv00271 (Undocumented) SBML MML
sfv00272 (Undocumented) SBML MML
sfv00280 Valine, leucine and isoleucine degradation SBML MML
sfv00281 Geraniol degradation SBML MML
sfv00290 Valine, leucine and isoleucine biosynthesis SBML MML
sfv00300 Lysine biosynthesis SBML MML
sfv00310 Lysine degradation SBML MML
sfv00330 Arginine and proline metabolism SBML MML
sfv00340 Histidine metabolism SBML MML
sfv00350 Tyrosine metabolism SBML MML
sfv00360 Phenylalanine metabolism SBML MML
sfv00361 gamma-Hexachlorocyclohexane degradation SBML MML
sfv00362 (Undocumented) SBML MML
sfv00364 Fluorobenzoate degradation SBML MML
sfv00380 Tryptophan metabolism SBML MML
sfv00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sfv00401 Novobiocin biosynthesis SBML MML
sfv00410 beta-Alanine metabolism SBML MML
sfv00430 Taurine and hypotaurine metabolism SBML MML
sfv00450 Selenoamino acid metabolism SBML MML
sfv00460 (Undocumented) SBML MML
sfv00471 D-Glutamine and D-glutamate metabolism SBML MML
sfv00473 D-Alanine metabolism SBML MML
sfv00480 Glutathione metabolism SBML MML
sfv00500 Starch and sucrose metabolism SBML MML
sfv00520 Amino sugar and nucleotide sugar metabolism SBML MML
sfv00521 Streptomycin biosynthesis SBML MML
sfv00523 Polyketide sugar unit biosynthesis SBML MML
sfv00530 (Undocumented) SBML MML
sfv00540 Lipopolysaccharide biosynthesis SBML MML
sfv00550 Peptidoglycan biosynthesis SBML MML
sfv00561 Glycerolipid metabolism SBML MML
sfv00562 Inositol phosphate metabolism SBML MML
sfv00564 Glycerophospholipid metabolism SBML MML
sfv00590 Arachidonic acid metabolism SBML MML
sfv00592 alpha-Linolenic acid metabolism SBML MML
sfv00600 Sphingolipid metabolism SBML MML
sfv00620 Pyruvate metabolism SBML MML
sfv00624 1- and 2-Methylnaphthalene degradation SBML MML
sfv00626 Naphthalene and anthracene degradation SBML MML
sfv00627 1,4-Dichlorobenzene degradation SBML MML
sfv00630 Glyoxylate and dicarboxylate metabolism SBML MML
sfv00632 (Undocumented) SBML MML
sfv00633 Trinitrotoluene degradation SBML MML
sfv00640 Propanoate metabolism SBML MML
sfv00641 3-Chloroacrylic acid degradation SBML MML
sfv00650 Butanoate metabolism SBML MML
sfv00660 C5-Branched dibasic acid metabolism SBML MML
sfv00670 One carbon pool by folate SBML MML
sfv00680 Methane metabolism SBML MML
sfv00710 (Undocumented) SBML MML
sfv00720 (Undocumented) SBML MML
sfv00730 Thiamine metabolism SBML MML
sfv00740 Riboflavin metabolism SBML MML
sfv00750 Vitamin B6 metabolism SBML MML
sfv00760 Nicotinate and nicotinamide metabolism SBML MML
sfv00770 Pantothenate and CoA biosynthesis SBML MML
sfv00780 Biotin metabolism SBML MML
sfv00785 Lipoic acid metabolism SBML MML
sfv00790 Folate biosynthesis SBML MML
sfv00791 Atrazine degradation SBML MML
sfv00860 Porphyrin and chlorophyll metabolism SBML MML
sfv00900 Terpenoid backbone biosynthesis SBML MML
sfv00903 (Undocumented) SBML MML
sfv00910 Nitrogen metabolism SBML MML
sfv00920 Sulfur metabolism SBML MML
sfv00930 Caprolactam degradation SBML MML
sfv00940 (Undocumented) SBML MML
sfv00950 (Undocumented) SBML MML
sfv00960 (Undocumented) SBML MML
sfv00970 Aminoacyl-tRNA biosynthesis SBML MML
sfv00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sfv00982 (Undocumented) SBML MML
sfv00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.