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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sfu: Syntrophobacter fumaroxidans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sfu00010 Glycolysis / Gluconeogenesis SBML MML
sfu00020 Citrate cycle (TCA cycle) SBML MML
sfu00030 Pentose phosphate pathway SBML MML
sfu00040 Pentose and glucuronate interconversions SBML MML
sfu00051 Fructose and mannose metabolism SBML MML
sfu00052 Galactose metabolism SBML MML
sfu00053 Ascorbate and aldarate metabolism SBML MML
sfu00061 Fatty acid biosynthesis SBML MML
sfu00071 Fatty acid metabolism SBML MML
sfu00072 Synthesis and degradation of ketone bodies SBML MML
sfu00100 (Undocumented) SBML MML
sfu00120 (Undocumented) SBML MML
sfu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sfu00220 (Undocumented) SBML MML
sfu00230 Purine metabolism SBML MML
sfu00240 Pyrimidine metabolism SBML MML
sfu00251 (Undocumented) SBML MML
sfu00252 (Undocumented) SBML MML
sfu00260 Glycine, serine and threonine metabolism SBML MML
sfu00271 (Undocumented) SBML MML
sfu00272 (Undocumented) SBML MML
sfu00280 Valine, leucine and isoleucine degradation SBML MML
sfu00281 Geraniol degradation SBML MML
sfu00290 Valine, leucine and isoleucine biosynthesis SBML MML
sfu00300 Lysine biosynthesis SBML MML
sfu00310 Lysine degradation SBML MML
sfu00330 Arginine and proline metabolism SBML MML
sfu00340 Histidine metabolism SBML MML
sfu00350 Tyrosine metabolism SBML MML
sfu00360 Phenylalanine metabolism SBML MML
sfu00362 (Undocumented) SBML MML
sfu00380 Tryptophan metabolism SBML MML
sfu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sfu00401 Novobiocin biosynthesis SBML MML
sfu00410 beta-Alanine metabolism SBML MML
sfu00430 Taurine and hypotaurine metabolism SBML MML
sfu00440 Phosphonate and phosphinate metabolism SBML MML
sfu00450 Selenoamino acid metabolism SBML MML
sfu00460 (Undocumented) SBML MML
sfu00471 D-Glutamine and D-glutamate metabolism SBML MML
sfu00473 D-Alanine metabolism SBML MML
sfu00480 Glutathione metabolism SBML MML
sfu00500 Starch and sucrose metabolism SBML MML
sfu00520 Amino sugar and nucleotide sugar metabolism SBML MML
sfu00521 Streptomycin biosynthesis SBML MML
sfu00523 Polyketide sugar unit biosynthesis SBML MML
sfu00530 (Undocumented) SBML MML
sfu00540 Lipopolysaccharide biosynthesis SBML MML
sfu00550 Peptidoglycan biosynthesis SBML MML
sfu00561 Glycerolipid metabolism SBML MML
sfu00562 Inositol phosphate metabolism SBML MML
sfu00564 Glycerophospholipid metabolism SBML MML
sfu00592 alpha-Linolenic acid metabolism SBML MML
sfu00620 Pyruvate metabolism SBML MML
sfu00622 Toluene and xylene degradation SBML MML
sfu00628 Fluorene degradation SBML MML
sfu00630 Glyoxylate and dicarboxylate metabolism SBML MML
sfu00632 (Undocumented) SBML MML
sfu00633 Trinitrotoluene degradation SBML MML
sfu00640 Propanoate metabolism SBML MML
sfu00641 3-Chloroacrylic acid degradation SBML MML
sfu00643 Styrene degradation SBML MML
sfu00650 Butanoate metabolism SBML MML
sfu00660 C5-Branched dibasic acid metabolism SBML MML
sfu00670 One carbon pool by folate SBML MML
sfu00680 Methane metabolism SBML MML
sfu00710 (Undocumented) SBML MML
sfu00720 (Undocumented) SBML MML
sfu00730 Thiamine metabolism SBML MML
sfu00740 Riboflavin metabolism SBML MML
sfu00750 Vitamin B6 metabolism SBML MML
sfu00760 Nicotinate and nicotinamide metabolism SBML MML
sfu00770 Pantothenate and CoA biosynthesis SBML MML
sfu00780 Biotin metabolism SBML MML
sfu00785 Lipoic acid metabolism SBML MML
sfu00790 Folate biosynthesis SBML MML
sfu00860 Porphyrin and chlorophyll metabolism SBML MML
sfu00900 Terpenoid backbone biosynthesis SBML MML
sfu00910 Nitrogen metabolism SBML MML
sfu00920 Sulfur metabolism SBML MML
sfu00930 Caprolactam degradation SBML MML
sfu00940 (Undocumented) SBML MML
sfu00950 (Undocumented) SBML MML
sfu00970 Aminoacyl-tRNA biosynthesis SBML MML
sfu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.