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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sen: Saccharopolyspora erythraea

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sen00010 Glycolysis / Gluconeogenesis SBML MML
sen00020 Citrate cycle (TCA cycle) SBML MML
sen00030 Pentose phosphate pathway SBML MML
sen00031 (Undocumented) SBML MML
sen00040 Pentose and glucuronate interconversions SBML MML
sen00051 Fructose and mannose metabolism SBML MML
sen00052 Galactose metabolism SBML MML
sen00053 Ascorbate and aldarate metabolism SBML MML
sen00061 Fatty acid biosynthesis SBML MML
sen00062 Fatty acid elongation in mitochondria SBML MML
sen00071 Fatty acid metabolism SBML MML
sen00072 Synthesis and degradation of ketone bodies SBML MML
sen00100 (Undocumented) SBML MML
sen00120 (Undocumented) SBML MML
sen00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sen00140 (Undocumented) SBML MML
sen00150 Androgen and estrogen metabolism SBML MML
sen00220 (Undocumented) SBML MML
sen00230 Purine metabolism SBML MML
sen00232 Caffeine metabolism SBML MML
sen00240 Pyrimidine metabolism SBML MML
sen00251 (Undocumented) SBML MML
sen00252 (Undocumented) SBML MML
sen00260 Glycine, serine and threonine metabolism SBML MML
sen00271 (Undocumented) SBML MML
sen00272 (Undocumented) SBML MML
sen00280 Valine, leucine and isoleucine degradation SBML MML
sen00281 Geraniol degradation SBML MML
sen00290 Valine, leucine and isoleucine biosynthesis SBML MML
sen00300 Lysine biosynthesis SBML MML
sen00310 Lysine degradation SBML MML
sen00311 Penicillin and cephalosporin biosynthesis SBML MML
sen00330 Arginine and proline metabolism SBML MML
sen00340 Histidine metabolism SBML MML
sen00350 Tyrosine metabolism SBML MML
sen00360 Phenylalanine metabolism SBML MML
sen00361 gamma-Hexachlorocyclohexane degradation SBML MML
sen00362 (Undocumented) SBML MML
sen00363 Bisphenol A degradation SBML MML
sen00364 Fluorobenzoate degradation SBML MML
sen00380 Tryptophan metabolism SBML MML
sen00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sen00401 Novobiocin biosynthesis SBML MML
sen00410 beta-Alanine metabolism SBML MML
sen00430 Taurine and hypotaurine metabolism SBML MML
sen00440 Phosphonate and phosphinate metabolism SBML MML
sen00450 Selenoamino acid metabolism SBML MML
sen00460 (Undocumented) SBML MML
sen00471 D-Glutamine and D-glutamate metabolism SBML MML
sen00472 D-Arginine and D-ornithine metabolism SBML MML
sen00473 D-Alanine metabolism SBML MML
sen00480 Glutathione metabolism SBML MML
sen00500 Starch and sucrose metabolism SBML MML
sen00510 (Undocumented) SBML MML
sen00520 Amino sugar and nucleotide sugar metabolism SBML MML
sen00521 Streptomycin biosynthesis SBML MML
sen00523 Polyketide sugar unit biosynthesis SBML MML
sen00530 (Undocumented) SBML MML
sen00550 Peptidoglycan biosynthesis SBML MML
sen00561 Glycerolipid metabolism SBML MML
sen00562 Inositol phosphate metabolism SBML MML
sen00564 Glycerophospholipid metabolism SBML MML
sen00565 Ether lipid metabolism SBML MML
sen00592 alpha-Linolenic acid metabolism SBML MML
sen00600 Sphingolipid metabolism SBML MML
sen00620 Pyruvate metabolism SBML MML
sen00622 Toluene and xylene degradation SBML MML
sen00623 2,4-Dichlorobenzoate degradation SBML MML
sen00624 1- and 2-Methylnaphthalene degradation SBML MML
sen00626 Naphthalene and anthracene degradation SBML MML
sen00627 1,4-Dichlorobenzene degradation SBML MML
sen00628 Fluorene degradation SBML MML
sen00630 Glyoxylate and dicarboxylate metabolism SBML MML
sen00631 1,2-Dichloroethane degradation SBML MML
sen00632 (Undocumented) SBML MML
sen00640 Propanoate metabolism SBML MML
sen00641 3-Chloroacrylic acid degradation SBML MML
sen00642 Ethylbenzene degradation SBML MML
sen00643 Styrene degradation SBML MML
sen00650 Butanoate metabolism SBML MML
sen00660 C5-Branched dibasic acid metabolism SBML MML
sen00670 One carbon pool by folate SBML MML
sen00680 Methane metabolism SBML MML
sen00710 (Undocumented) SBML MML
sen00720 (Undocumented) SBML MML
sen00730 Thiamine metabolism SBML MML
sen00740 Riboflavin metabolism SBML MML
sen00750 Vitamin B6 metabolism SBML MML
sen00760 Nicotinate and nicotinamide metabolism SBML MML
sen00770 Pantothenate and CoA biosynthesis SBML MML
sen00780 Biotin metabolism SBML MML
sen00785 Lipoic acid metabolism SBML MML
sen00790 Folate biosynthesis SBML MML
sen00791 Atrazine degradation SBML MML
sen00860 Porphyrin and chlorophyll metabolism SBML MML
sen00900 Terpenoid backbone biosynthesis SBML MML
sen00903 (Undocumented) SBML MML
sen00906 Carotenoid biosynthesis SBML MML
sen00910 Nitrogen metabolism SBML MML
sen00920 Sulfur metabolism SBML MML
sen00930 Caprolactam degradation SBML MML
sen00940 (Undocumented) SBML MML
sen00941 (Undocumented) SBML MML
sen00950 (Undocumented) SBML MML
sen00960 (Undocumented) SBML MML
sen00970 Aminoacyl-tRNA biosynthesis SBML MML
sen00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sen00982 (Undocumented) SBML MML
sen00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.