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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sdy: Shigella dysenteriae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sdy00010 Glycolysis / Gluconeogenesis SBML MML
sdy00020 Citrate cycle (TCA cycle) SBML MML
sdy00030 Pentose phosphate pathway SBML MML
sdy00040 Pentose and glucuronate interconversions SBML MML
sdy00051 Fructose and mannose metabolism SBML MML
sdy00052 Galactose metabolism SBML MML
sdy00053 Ascorbate and aldarate metabolism SBML MML
sdy00061 Fatty acid biosynthesis SBML MML
sdy00062 Fatty acid elongation in mitochondria SBML MML
sdy00071 Fatty acid metabolism SBML MML
sdy00100 (Undocumented) SBML MML
sdy00120 (Undocumented) SBML MML
sdy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sdy00150 Androgen and estrogen metabolism SBML MML
sdy00220 (Undocumented) SBML MML
sdy00230 Purine metabolism SBML MML
sdy00240 Pyrimidine metabolism SBML MML
sdy00251 (Undocumented) SBML MML
sdy00252 (Undocumented) SBML MML
sdy00260 Glycine, serine and threonine metabolism SBML MML
sdy00271 (Undocumented) SBML MML
sdy00272 (Undocumented) SBML MML
sdy00280 Valine, leucine and isoleucine degradation SBML MML
sdy00281 Geraniol degradation SBML MML
sdy00290 Valine, leucine and isoleucine biosynthesis SBML MML
sdy00300 Lysine biosynthesis SBML MML
sdy00310 Lysine degradation SBML MML
sdy00330 Arginine and proline metabolism SBML MML
sdy00340 Histidine metabolism SBML MML
sdy00350 Tyrosine metabolism SBML MML
sdy00360 Phenylalanine metabolism SBML MML
sdy00361 gamma-Hexachlorocyclohexane degradation SBML MML
sdy00364 Fluorobenzoate degradation SBML MML
sdy00380 Tryptophan metabolism SBML MML
sdy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sdy00401 Novobiocin biosynthesis SBML MML
sdy00410 beta-Alanine metabolism SBML MML
sdy00430 Taurine and hypotaurine metabolism SBML MML
sdy00450 Selenoamino acid metabolism SBML MML
sdy00460 (Undocumented) SBML MML
sdy00471 D-Glutamine and D-glutamate metabolism SBML MML
sdy00473 D-Alanine metabolism SBML MML
sdy00480 Glutathione metabolism SBML MML
sdy00500 Starch and sucrose metabolism SBML MML
sdy00520 Amino sugar and nucleotide sugar metabolism SBML MML
sdy00521 Streptomycin biosynthesis SBML MML
sdy00523 Polyketide sugar unit biosynthesis SBML MML
sdy00530 (Undocumented) SBML MML
sdy00540 Lipopolysaccharide biosynthesis SBML MML
sdy00550 Peptidoglycan biosynthesis SBML MML
sdy00561 Glycerolipid metabolism SBML MML
sdy00562 Inositol phosphate metabolism SBML MML
sdy00564 Glycerophospholipid metabolism SBML MML
sdy00590 Arachidonic acid metabolism SBML MML
sdy00592 alpha-Linolenic acid metabolism SBML MML
sdy00600 Sphingolipid metabolism SBML MML
sdy00620 Pyruvate metabolism SBML MML
sdy00624 1- and 2-Methylnaphthalene degradation SBML MML
sdy00627 1,4-Dichlorobenzene degradation SBML MML
sdy00630 Glyoxylate and dicarboxylate metabolism SBML MML
sdy00632 (Undocumented) SBML MML
sdy00633 Trinitrotoluene degradation SBML MML
sdy00640 Propanoate metabolism SBML MML
sdy00641 3-Chloroacrylic acid degradation SBML MML
sdy00650 Butanoate metabolism SBML MML
sdy00660 C5-Branched dibasic acid metabolism SBML MML
sdy00670 One carbon pool by folate SBML MML
sdy00680 Methane metabolism SBML MML
sdy00710 (Undocumented) SBML MML
sdy00720 (Undocumented) SBML MML
sdy00730 Thiamine metabolism SBML MML
sdy00740 Riboflavin metabolism SBML MML
sdy00750 Vitamin B6 metabolism SBML MML
sdy00760 Nicotinate and nicotinamide metabolism SBML MML
sdy00770 Pantothenate and CoA biosynthesis SBML MML
sdy00780 Biotin metabolism SBML MML
sdy00785 Lipoic acid metabolism SBML MML
sdy00790 Folate biosynthesis SBML MML
sdy00791 Atrazine degradation SBML MML
sdy00860 Porphyrin and chlorophyll metabolism SBML MML
sdy00900 Terpenoid backbone biosynthesis SBML MML
sdy00903 (Undocumented) SBML MML
sdy00910 Nitrogen metabolism SBML MML
sdy00920 Sulfur metabolism SBML MML
sdy00930 Caprolactam degradation SBML MML
sdy00950 (Undocumented) SBML MML
sdy00970 Aminoacyl-tRNA biosynthesis SBML MML
sdy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sdy00982 (Undocumented) SBML MML
sdy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.