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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sco: Streptomyces coelicolor

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sco00010 Glycolysis / Gluconeogenesis SBML MML
sco00020 Citrate cycle (TCA cycle) SBML MML
sco00030 Pentose phosphate pathway SBML MML
sco00031 (Undocumented) SBML MML
sco00040 Pentose and glucuronate interconversions SBML MML
sco00051 Fructose and mannose metabolism SBML MML
sco00052 Galactose metabolism SBML MML
sco00053 Ascorbate and aldarate metabolism SBML MML
sco00061 Fatty acid biosynthesis SBML MML
sco00062 Fatty acid elongation in mitochondria SBML MML
sco00071 Fatty acid metabolism SBML MML
sco00072 Synthesis and degradation of ketone bodies SBML MML
sco00100 (Undocumented) SBML MML
sco00120 (Undocumented) SBML MML
sco00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sco00150 Androgen and estrogen metabolism SBML MML
sco00220 (Undocumented) SBML MML
sco00230 Purine metabolism SBML MML
sco00232 Caffeine metabolism SBML MML
sco00240 Pyrimidine metabolism SBML MML
sco00251 (Undocumented) SBML MML
sco00252 (Undocumented) SBML MML
sco00260 Glycine, serine and threonine metabolism SBML MML
sco00271 (Undocumented) SBML MML
sco00272 (Undocumented) SBML MML
sco00280 Valine, leucine and isoleucine degradation SBML MML
sco00281 Geraniol degradation SBML MML
sco00290 Valine, leucine and isoleucine biosynthesis SBML MML
sco00300 Lysine biosynthesis SBML MML
sco00310 Lysine degradation SBML MML
sco00311 Penicillin and cephalosporin biosynthesis SBML MML
sco00330 Arginine and proline metabolism SBML MML
sco00340 Histidine metabolism SBML MML
sco00350 Tyrosine metabolism SBML MML
sco00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
sco00360 Phenylalanine metabolism SBML MML
sco00361 gamma-Hexachlorocyclohexane degradation SBML MML
sco00362 (Undocumented) SBML MML
sco00363 Bisphenol A degradation SBML MML
sco00364 Fluorobenzoate degradation SBML MML
sco00380 Tryptophan metabolism SBML MML
sco00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sco00401 Novobiocin biosynthesis SBML MML
sco00410 beta-Alanine metabolism SBML MML
sco00430 Taurine and hypotaurine metabolism SBML MML
sco00450 Selenoamino acid metabolism SBML MML
sco00460 (Undocumented) SBML MML
sco00471 D-Glutamine and D-glutamate metabolism SBML MML
sco00473 D-Alanine metabolism SBML MML
sco00480 Glutathione metabolism SBML MML
sco00500 Starch and sucrose metabolism SBML MML
sco00510 (Undocumented) SBML MML
sco00520 Amino sugar and nucleotide sugar metabolism SBML MML
sco00521 Streptomycin biosynthesis SBML MML
sco00523 Polyketide sugar unit biosynthesis SBML MML
sco00530 (Undocumented) SBML MML
sco00550 Peptidoglycan biosynthesis SBML MML
sco00561 Glycerolipid metabolism SBML MML
sco00562 Inositol phosphate metabolism SBML MML
sco00564 Glycerophospholipid metabolism SBML MML
sco00565 Ether lipid metabolism SBML MML
sco00590 Arachidonic acid metabolism SBML MML
sco00592 alpha-Linolenic acid metabolism SBML MML
sco00600 Sphingolipid metabolism SBML MML
sco00620 Pyruvate metabolism SBML MML
sco00621 (Undocumented) SBML MML
sco00622 Toluene and xylene degradation SBML MML
sco00623 2,4-Dichlorobenzoate degradation SBML MML
sco00624 1- and 2-Methylnaphthalene degradation SBML MML
sco00626 Naphthalene and anthracene degradation SBML MML
sco00627 1,4-Dichlorobenzene degradation SBML MML
sco00628 Fluorene degradation SBML MML
sco00629 Carbazole degradation SBML MML
sco00630 Glyoxylate and dicarboxylate metabolism SBML MML
sco00631 1,2-Dichloroethane degradation SBML MML
sco00632 (Undocumented) SBML MML
sco00640 Propanoate metabolism SBML MML
sco00641 3-Chloroacrylic acid degradation SBML MML
sco00642 Ethylbenzene degradation SBML MML
sco00643 Styrene degradation SBML MML
sco00650 Butanoate metabolism SBML MML
sco00660 C5-Branched dibasic acid metabolism SBML MML
sco00670 One carbon pool by folate SBML MML
sco00680 Methane metabolism SBML MML
sco00710 (Undocumented) SBML MML
sco00720 (Undocumented) SBML MML
sco00730 Thiamine metabolism SBML MML
sco00740 Riboflavin metabolism SBML MML
sco00750 Vitamin B6 metabolism SBML MML
sco00760 Nicotinate and nicotinamide metabolism SBML MML
sco00770 Pantothenate and CoA biosynthesis SBML MML
sco00780 Biotin metabolism SBML MML
sco00785 Lipoic acid metabolism SBML MML
sco00790 Folate biosynthesis SBML MML
sco00791 Atrazine degradation SBML MML
sco00860 Porphyrin and chlorophyll metabolism SBML MML
sco00900 Terpenoid backbone biosynthesis SBML MML
sco00903 (Undocumented) SBML MML
sco00906 Carotenoid biosynthesis SBML MML
sco00910 Nitrogen metabolism SBML MML
sco00920 Sulfur metabolism SBML MML
sco00930 Caprolactam degradation SBML MML
sco00940 (Undocumented) SBML MML
sco00941 (Undocumented) SBML MML
sco00950 (Undocumented) SBML MML
sco00960 (Undocumented) SBML MML
sco00970 Aminoacyl-tRNA biosynthesis SBML MML
sco00982 (Undocumented) SBML MML
sco00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.