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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism scl: Sorangium cellulosum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
scl00010 Glycolysis / Gluconeogenesis SBML MML
scl00020 Citrate cycle (TCA cycle) SBML MML
scl00030 Pentose phosphate pathway SBML MML
scl00031 (Undocumented) SBML MML
scl00040 Pentose and glucuronate interconversions SBML MML
scl00051 Fructose and mannose metabolism SBML MML
scl00052 Galactose metabolism SBML MML
scl00053 Ascorbate and aldarate metabolism SBML MML
scl00061 Fatty acid biosynthesis SBML MML
scl00062 Fatty acid elongation in mitochondria SBML MML
scl00071 Fatty acid metabolism SBML MML
scl00072 Synthesis and degradation of ketone bodies SBML MML
scl00100 (Undocumented) SBML MML
scl00120 (Undocumented) SBML MML
scl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
scl00150 Androgen and estrogen metabolism SBML MML
scl00220 (Undocumented) SBML MML
scl00230 Purine metabolism SBML MML
scl00240 Pyrimidine metabolism SBML MML
scl00251 (Undocumented) SBML MML
scl00252 (Undocumented) SBML MML
scl00260 Glycine, serine and threonine metabolism SBML MML
scl00271 (Undocumented) SBML MML
scl00272 (Undocumented) SBML MML
scl00280 Valine, leucine and isoleucine degradation SBML MML
scl00281 Geraniol degradation SBML MML
scl00290 Valine, leucine and isoleucine biosynthesis SBML MML
scl00300 Lysine biosynthesis SBML MML
scl00310 Lysine degradation SBML MML
scl00311 Penicillin and cephalosporin biosynthesis SBML MML
scl00330 Arginine and proline metabolism SBML MML
scl00340 Histidine metabolism SBML MML
scl00350 Tyrosine metabolism SBML MML
scl00360 Phenylalanine metabolism SBML MML
scl00361 gamma-Hexachlorocyclohexane degradation SBML MML
scl00362 (Undocumented) SBML MML
scl00363 Bisphenol A degradation SBML MML
scl00364 Fluorobenzoate degradation SBML MML
scl00380 Tryptophan metabolism SBML MML
scl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
scl00401 Novobiocin biosynthesis SBML MML
scl00410 beta-Alanine metabolism SBML MML
scl00430 Taurine and hypotaurine metabolism SBML MML
scl00440 Phosphonate and phosphinate metabolism SBML MML
scl00450 Selenoamino acid metabolism SBML MML
scl00460 (Undocumented) SBML MML
scl00471 D-Glutamine and D-glutamate metabolism SBML MML
scl00473 D-Alanine metabolism SBML MML
scl00480 Glutathione metabolism SBML MML
scl00500 Starch and sucrose metabolism SBML MML
scl00510 (Undocumented) SBML MML
scl00520 Amino sugar and nucleotide sugar metabolism SBML MML
scl00521 Streptomycin biosynthesis SBML MML
scl00523 Polyketide sugar unit biosynthesis SBML MML
scl00530 (Undocumented) SBML MML
scl00540 Lipopolysaccharide biosynthesis SBML MML
scl00550 Peptidoglycan biosynthesis SBML MML
scl00561 Glycerolipid metabolism SBML MML
scl00562 Inositol phosphate metabolism SBML MML
scl00564 Glycerophospholipid metabolism SBML MML
scl00565 Ether lipid metabolism SBML MML
scl00590 Arachidonic acid metabolism SBML MML
scl00591 Linoleic acid metabolism SBML MML
scl00592 alpha-Linolenic acid metabolism SBML MML
scl00600 Sphingolipid metabolism SBML MML
scl00620 Pyruvate metabolism SBML MML
scl00622 Toluene and xylene degradation SBML MML
scl00623 2,4-Dichlorobenzoate degradation SBML MML
scl00624 1- and 2-Methylnaphthalene degradation SBML MML
scl00626 Naphthalene and anthracene degradation SBML MML
scl00627 1,4-Dichlorobenzene degradation SBML MML
scl00630 Glyoxylate and dicarboxylate metabolism SBML MML
scl00631 1,2-Dichloroethane degradation SBML MML
scl00632 (Undocumented) SBML MML
scl00640 Propanoate metabolism SBML MML
scl00641 3-Chloroacrylic acid degradation SBML MML
scl00643 Styrene degradation SBML MML
scl00650 Butanoate metabolism SBML MML
scl00660 C5-Branched dibasic acid metabolism SBML MML
scl00670 One carbon pool by folate SBML MML
scl00680 Methane metabolism SBML MML
scl00710 (Undocumented) SBML MML
scl00720 (Undocumented) SBML MML
scl00730 Thiamine metabolism SBML MML
scl00740 Riboflavin metabolism SBML MML
scl00750 Vitamin B6 metabolism SBML MML
scl00760 Nicotinate and nicotinamide metabolism SBML MML
scl00770 Pantothenate and CoA biosynthesis SBML MML
scl00780 Biotin metabolism SBML MML
scl00785 Lipoic acid metabolism SBML MML
scl00790 Folate biosynthesis SBML MML
scl00791 Atrazine degradation SBML MML
scl00860 Porphyrin and chlorophyll metabolism SBML MML
scl00900 Terpenoid backbone biosynthesis SBML MML
scl00903 (Undocumented) SBML MML
scl00906 Carotenoid biosynthesis SBML MML
scl00910 Nitrogen metabolism SBML MML
scl00920 Sulfur metabolism SBML MML
scl00930 Caprolactam degradation SBML MML
scl00940 (Undocumented) SBML MML
scl00941 (Undocumented) SBML MML
scl00950 (Undocumented) SBML MML
scl00960 (Undocumented) SBML MML
scl00970 Aminoacyl-tRNA biosynthesis SBML MML
scl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
scl00982 (Undocumented) SBML MML
scl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.