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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sce: Saccharomyces cerevisiae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sce00010 Glycolysis / Gluconeogenesis SBML MML
sce00020 Citrate cycle (TCA cycle) SBML MML
sce00030 Pentose phosphate pathway SBML MML
sce00040 Pentose and glucuronate interconversions SBML MML
sce00051 Fructose and mannose metabolism SBML MML
sce00052 Galactose metabolism SBML MML
sce00061 Fatty acid biosynthesis SBML MML
sce00062 Fatty acid elongation in mitochondria SBML MML
sce00071 Fatty acid metabolism SBML MML
sce00072 Synthesis and degradation of ketone bodies SBML MML
sce00100 (Undocumented) SBML MML
sce00120 (Undocumented) SBML MML
sce00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sce00220 (Undocumented) SBML MML
sce00230 Purine metabolism SBML MML
sce00240 Pyrimidine metabolism SBML MML
sce00251 (Undocumented) SBML MML
sce00252 (Undocumented) SBML MML
sce00260 Glycine, serine and threonine metabolism SBML MML
sce00271 (Undocumented) SBML MML
sce00272 (Undocumented) SBML MML
sce00280 Valine, leucine and isoleucine degradation SBML MML
sce00281 Geraniol degradation SBML MML
sce00290 Valine, leucine and isoleucine biosynthesis SBML MML
sce00300 Lysine biosynthesis SBML MML
sce00310 Lysine degradation SBML MML
sce00330 Arginine and proline metabolism SBML MML
sce00340 Histidine metabolism SBML MML
sce00350 Tyrosine metabolism SBML MML
sce00360 Phenylalanine metabolism SBML MML
sce00361 gamma-Hexachlorocyclohexane degradation SBML MML
sce00362 (Undocumented) SBML MML
sce00364 Fluorobenzoate degradation SBML MML
sce00380 Tryptophan metabolism SBML MML
sce00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sce00401 Novobiocin biosynthesis SBML MML
sce00410 beta-Alanine metabolism SBML MML
sce00430 Taurine and hypotaurine metabolism SBML MML
sce00440 Phosphonate and phosphinate metabolism SBML MML
sce00450 Selenoamino acid metabolism SBML MML
sce00460 (Undocumented) SBML MML
sce00480 Glutathione metabolism SBML MML
sce00500 Starch and sucrose metabolism SBML MML
sce00510 (Undocumented) SBML MML
sce00520 Amino sugar and nucleotide sugar metabolism SBML MML
sce00521 Streptomycin biosynthesis SBML MML
sce00530 (Undocumented) SBML MML
sce00550 Peptidoglycan biosynthesis SBML MML
sce00561 Glycerolipid metabolism SBML MML
sce00562 Inositol phosphate metabolism SBML MML
sce00564 Glycerophospholipid metabolism SBML MML
sce00565 Ether lipid metabolism SBML MML
sce00590 Arachidonic acid metabolism SBML MML
sce00592 alpha-Linolenic acid metabolism SBML MML
sce00600 Sphingolipid metabolism SBML MML
sce00620 Pyruvate metabolism SBML MML
sce00624 1- and 2-Methylnaphthalene degradation SBML MML
sce00627 1,4-Dichlorobenzene degradation SBML MML
sce00630 Glyoxylate and dicarboxylate metabolism SBML MML
sce00632 (Undocumented) SBML MML
sce00640 Propanoate metabolism SBML MML
sce00641 3-Chloroacrylic acid degradation SBML MML
sce00642 Ethylbenzene degradation SBML MML
sce00643 Styrene degradation SBML MML
sce00650 Butanoate metabolism SBML MML
sce00660 C5-Branched dibasic acid metabolism SBML MML
sce00670 One carbon pool by folate SBML MML
sce00680 Methane metabolism SBML MML
sce00710 (Undocumented) SBML MML
sce00720 (Undocumented) SBML MML
sce00730 Thiamine metabolism SBML MML
sce00740 Riboflavin metabolism SBML MML
sce00750 Vitamin B6 metabolism SBML MML
sce00760 Nicotinate and nicotinamide metabolism SBML MML
sce00770 Pantothenate and CoA biosynthesis SBML MML
sce00780 Biotin metabolism SBML MML
sce00785 Lipoic acid metabolism SBML MML
sce00790 Folate biosynthesis SBML MML
sce00860 Porphyrin and chlorophyll metabolism SBML MML
sce00900 Terpenoid backbone biosynthesis SBML MML
sce00903 (Undocumented) SBML MML
sce00910 Nitrogen metabolism SBML MML
sce00920 Sulfur metabolism SBML MML
sce00960 (Undocumented) SBML MML
sce00970 Aminoacyl-tRNA biosynthesis SBML MML
sce00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sce00982 (Undocumented) SBML MML
sce00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.