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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sbo: Shigella boydii Sb227

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sbo00010 Glycolysis / Gluconeogenesis SBML MML
sbo00020 Citrate cycle (TCA cycle) SBML MML
sbo00030 Pentose phosphate pathway SBML MML
sbo00040 Pentose and glucuronate interconversions SBML MML
sbo00051 Fructose and mannose metabolism SBML MML
sbo00052 Galactose metabolism SBML MML
sbo00053 Ascorbate and aldarate metabolism SBML MML
sbo00061 Fatty acid biosynthesis SBML MML
sbo00062 Fatty acid elongation in mitochondria SBML MML
sbo00071 Fatty acid metabolism SBML MML
sbo00100 (Undocumented) SBML MML
sbo00120 (Undocumented) SBML MML
sbo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sbo00220 (Undocumented) SBML MML
sbo00230 Purine metabolism SBML MML
sbo00240 Pyrimidine metabolism SBML MML
sbo00251 (Undocumented) SBML MML
sbo00252 (Undocumented) SBML MML
sbo00260 Glycine, serine and threonine metabolism SBML MML
sbo00271 (Undocumented) SBML MML
sbo00272 (Undocumented) SBML MML
sbo00280 Valine, leucine and isoleucine degradation SBML MML
sbo00281 Geraniol degradation SBML MML
sbo00290 Valine, leucine and isoleucine biosynthesis SBML MML
sbo00300 Lysine biosynthesis SBML MML
sbo00310 Lysine degradation SBML MML
sbo00311 Penicillin and cephalosporin biosynthesis SBML MML
sbo00330 Arginine and proline metabolism SBML MML
sbo00340 Histidine metabolism SBML MML
sbo00350 Tyrosine metabolism SBML MML
sbo00360 Phenylalanine metabolism SBML MML
sbo00361 gamma-Hexachlorocyclohexane degradation SBML MML
sbo00362 (Undocumented) SBML MML
sbo00364 Fluorobenzoate degradation SBML MML
sbo00380 Tryptophan metabolism SBML MML
sbo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sbo00401 Novobiocin biosynthesis SBML MML
sbo00410 beta-Alanine metabolism SBML MML
sbo00430 Taurine and hypotaurine metabolism SBML MML
sbo00450 Selenoamino acid metabolism SBML MML
sbo00460 (Undocumented) SBML MML
sbo00471 D-Glutamine and D-glutamate metabolism SBML MML
sbo00473 D-Alanine metabolism SBML MML
sbo00480 Glutathione metabolism SBML MML
sbo00500 Starch and sucrose metabolism SBML MML
sbo00520 Amino sugar and nucleotide sugar metabolism SBML MML
sbo00521 Streptomycin biosynthesis SBML MML
sbo00523 Polyketide sugar unit biosynthesis SBML MML
sbo00530 (Undocumented) SBML MML
sbo00540 Lipopolysaccharide biosynthesis SBML MML
sbo00550 Peptidoglycan biosynthesis SBML MML
sbo00561 Glycerolipid metabolism SBML MML
sbo00562 Inositol phosphate metabolism SBML MML
sbo00564 Glycerophospholipid metabolism SBML MML
sbo00590 Arachidonic acid metabolism SBML MML
sbo00592 alpha-Linolenic acid metabolism SBML MML
sbo00600 Sphingolipid metabolism SBML MML
sbo00620 Pyruvate metabolism SBML MML
sbo00624 1- and 2-Methylnaphthalene degradation SBML MML
sbo00627 1,4-Dichlorobenzene degradation SBML MML
sbo00630 Glyoxylate and dicarboxylate metabolism SBML MML
sbo00632 (Undocumented) SBML MML
sbo00633 Trinitrotoluene degradation SBML MML
sbo00640 Propanoate metabolism SBML MML
sbo00641 3-Chloroacrylic acid degradation SBML MML
sbo00650 Butanoate metabolism SBML MML
sbo00660 C5-Branched dibasic acid metabolism SBML MML
sbo00670 One carbon pool by folate SBML MML
sbo00680 Methane metabolism SBML MML
sbo00710 (Undocumented) SBML MML
sbo00720 (Undocumented) SBML MML
sbo00730 Thiamine metabolism SBML MML
sbo00740 Riboflavin metabolism SBML MML
sbo00750 Vitamin B6 metabolism SBML MML
sbo00760 Nicotinate and nicotinamide metabolism SBML MML
sbo00770 Pantothenate and CoA biosynthesis SBML MML
sbo00780 Biotin metabolism SBML MML
sbo00785 Lipoic acid metabolism SBML MML
sbo00790 Folate biosynthesis SBML MML
sbo00791 Atrazine degradation SBML MML
sbo00860 Porphyrin and chlorophyll metabolism SBML MML
sbo00900 Terpenoid backbone biosynthesis SBML MML
sbo00903 (Undocumented) SBML MML
sbo00910 Nitrogen metabolism SBML MML
sbo00920 Sulfur metabolism SBML MML
sbo00930 Caprolactam degradation SBML MML
sbo00950 (Undocumented) SBML MML
sbo00970 Aminoacyl-tRNA biosynthesis SBML MML
sbo00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sbo00982 (Undocumented) SBML MML
sbo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.