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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sbn: Shewanella baltica OS195

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sbn00010 Glycolysis / Gluconeogenesis SBML MML
sbn00020 Citrate cycle (TCA cycle) SBML MML
sbn00030 Pentose phosphate pathway SBML MML
sbn00031 (Undocumented) SBML MML
sbn00040 Pentose and glucuronate interconversions SBML MML
sbn00051 Fructose and mannose metabolism SBML MML
sbn00052 Galactose metabolism SBML MML
sbn00053 Ascorbate and aldarate metabolism SBML MML
sbn00061 Fatty acid biosynthesis SBML MML
sbn00071 Fatty acid metabolism SBML MML
sbn00072 Synthesis and degradation of ketone bodies SBML MML
sbn00100 (Undocumented) SBML MML
sbn00120 (Undocumented) SBML MML
sbn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sbn00220 (Undocumented) SBML MML
sbn00230 Purine metabolism SBML MML
sbn00240 Pyrimidine metabolism SBML MML
sbn00251 (Undocumented) SBML MML
sbn00252 (Undocumented) SBML MML
sbn00260 Glycine, serine and threonine metabolism SBML MML
sbn00271 (Undocumented) SBML MML
sbn00272 (Undocumented) SBML MML
sbn00280 Valine, leucine and isoleucine degradation SBML MML
sbn00281 Geraniol degradation SBML MML
sbn00290 Valine, leucine and isoleucine biosynthesis SBML MML
sbn00300 Lysine biosynthesis SBML MML
sbn00310 Lysine degradation SBML MML
sbn00330 Arginine and proline metabolism SBML MML
sbn00340 Histidine metabolism SBML MML
sbn00350 Tyrosine metabolism SBML MML
sbn00360 Phenylalanine metabolism SBML MML
sbn00361 gamma-Hexachlorocyclohexane degradation SBML MML
sbn00362 (Undocumented) SBML MML
sbn00364 Fluorobenzoate degradation SBML MML
sbn00380 Tryptophan metabolism SBML MML
sbn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sbn00401 Novobiocin biosynthesis SBML MML
sbn00410 beta-Alanine metabolism SBML MML
sbn00430 Taurine and hypotaurine metabolism SBML MML
sbn00450 Selenoamino acid metabolism SBML MML
sbn00460 (Undocumented) SBML MML
sbn00471 D-Glutamine and D-glutamate metabolism SBML MML
sbn00473 D-Alanine metabolism SBML MML
sbn00480 Glutathione metabolism SBML MML
sbn00500 Starch and sucrose metabolism SBML MML
sbn00520 Amino sugar and nucleotide sugar metabolism SBML MML
sbn00521 Streptomycin biosynthesis SBML MML
sbn00523 Polyketide sugar unit biosynthesis SBML MML
sbn00530 (Undocumented) SBML MML
sbn00540 Lipopolysaccharide biosynthesis SBML MML
sbn00550 Peptidoglycan biosynthesis SBML MML
sbn00561 Glycerolipid metabolism SBML MML
sbn00562 Inositol phosphate metabolism SBML MML
sbn00564 Glycerophospholipid metabolism SBML MML
sbn00590 Arachidonic acid metabolism SBML MML
sbn00592 alpha-Linolenic acid metabolism SBML MML
sbn00620 Pyruvate metabolism SBML MML
sbn00624 1- and 2-Methylnaphthalene degradation SBML MML
sbn00626 Naphthalene and anthracene degradation SBML MML
sbn00627 1,4-Dichlorobenzene degradation SBML MML
sbn00630 Glyoxylate and dicarboxylate metabolism SBML MML
sbn00631 1,2-Dichloroethane degradation SBML MML
sbn00632 (Undocumented) SBML MML
sbn00633 Trinitrotoluene degradation SBML MML
sbn00640 Propanoate metabolism SBML MML
sbn00641 3-Chloroacrylic acid degradation SBML MML
sbn00642 Ethylbenzene degradation SBML MML
sbn00643 Styrene degradation SBML MML
sbn00650 Butanoate metabolism SBML MML
sbn00660 C5-Branched dibasic acid metabolism SBML MML
sbn00670 One carbon pool by folate SBML MML
sbn00680 Methane metabolism SBML MML
sbn00710 (Undocumented) SBML MML
sbn00720 (Undocumented) SBML MML
sbn00730 Thiamine metabolism SBML MML
sbn00740 Riboflavin metabolism SBML MML
sbn00750 Vitamin B6 metabolism SBML MML
sbn00760 Nicotinate and nicotinamide metabolism SBML MML
sbn00770 Pantothenate and CoA biosynthesis SBML MML
sbn00780 Biotin metabolism SBML MML
sbn00790 Folate biosynthesis SBML MML
sbn00791 Atrazine degradation SBML MML
sbn00860 Porphyrin and chlorophyll metabolism SBML MML
sbn00900 Terpenoid backbone biosynthesis SBML MML
sbn00903 (Undocumented) SBML MML
sbn00910 Nitrogen metabolism SBML MML
sbn00920 Sulfur metabolism SBML MML
sbn00930 Caprolactam degradation SBML MML
sbn00941 (Undocumented) SBML MML
sbn00950 (Undocumented) SBML MML
sbn00960 (Undocumented) SBML MML
sbn00970 Aminoacyl-tRNA biosynthesis SBML MML
sbn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sbn00982 (Undocumented) SBML MML
sbn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.