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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sav: Staphylococcus aureus Mu50

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sav00010 Glycolysis / Gluconeogenesis SBML MML
sav00020 Citrate cycle (TCA cycle) SBML MML
sav00030 Pentose phosphate pathway SBML MML
sav00040 Pentose and glucuronate interconversions SBML MML
sav00051 Fructose and mannose metabolism SBML MML
sav00052 Galactose metabolism SBML MML
sav00053 Ascorbate and aldarate metabolism SBML MML
sav00061 Fatty acid biosynthesis SBML MML
sav00062 Fatty acid elongation in mitochondria SBML MML
sav00071 Fatty acid metabolism SBML MML
sav00072 Synthesis and degradation of ketone bodies SBML MML
sav00100 (Undocumented) SBML MML
sav00120 (Undocumented) SBML MML
sav00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sav00220 (Undocumented) SBML MML
sav00230 Purine metabolism SBML MML
sav00240 Pyrimidine metabolism SBML MML
sav00251 (Undocumented) SBML MML
sav00252 (Undocumented) SBML MML
sav00260 Glycine, serine and threonine metabolism SBML MML
sav00271 (Undocumented) SBML MML
sav00272 (Undocumented) SBML MML
sav00280 Valine, leucine and isoleucine degradation SBML MML
sav00281 Geraniol degradation SBML MML
sav00290 Valine, leucine and isoleucine biosynthesis SBML MML
sav00300 Lysine biosynthesis SBML MML
sav00310 Lysine degradation SBML MML
sav00330 Arginine and proline metabolism SBML MML
sav00340 Histidine metabolism SBML MML
sav00350 Tyrosine metabolism SBML MML
sav00360 Phenylalanine metabolism SBML MML
sav00362 (Undocumented) SBML MML
sav00380 Tryptophan metabolism SBML MML
sav00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sav00410 beta-Alanine metabolism SBML MML
sav00430 Taurine and hypotaurine metabolism SBML MML
sav00440 Phosphonate and phosphinate metabolism SBML MML
sav00450 Selenoamino acid metabolism SBML MML
sav00460 (Undocumented) SBML MML
sav00471 D-Glutamine and D-glutamate metabolism SBML MML
sav00472 D-Arginine and D-ornithine metabolism SBML MML
sav00473 D-Alanine metabolism SBML MML
sav00480 Glutathione metabolism SBML MML
sav00500 Starch and sucrose metabolism SBML MML
sav00510 (Undocumented) SBML MML
sav00520 Amino sugar and nucleotide sugar metabolism SBML MML
sav00521 Streptomycin biosynthesis SBML MML
sav00530 (Undocumented) SBML MML
sav00550 Peptidoglycan biosynthesis SBML MML
sav00561 Glycerolipid metabolism SBML MML
sav00562 Inositol phosphate metabolism SBML MML
sav00564 Glycerophospholipid metabolism SBML MML
sav00590 Arachidonic acid metabolism SBML MML
sav00592 alpha-Linolenic acid metabolism SBML MML
sav00620 Pyruvate metabolism SBML MML
sav00624 1- and 2-Methylnaphthalene degradation SBML MML
sav00630 Glyoxylate and dicarboxylate metabolism SBML MML
sav00632 (Undocumented) SBML MML
sav00640 Propanoate metabolism SBML MML
sav00641 3-Chloroacrylic acid degradation SBML MML
sav00642 Ethylbenzene degradation SBML MML
sav00650 Butanoate metabolism SBML MML
sav00660 C5-Branched dibasic acid metabolism SBML MML
sav00670 One carbon pool by folate SBML MML
sav00680 Methane metabolism SBML MML
sav00710 (Undocumented) SBML MML
sav00720 (Undocumented) SBML MML
sav00730 Thiamine metabolism SBML MML
sav00740 Riboflavin metabolism SBML MML
sav00750 Vitamin B6 metabolism SBML MML
sav00760 Nicotinate and nicotinamide metabolism SBML MML
sav00770 Pantothenate and CoA biosynthesis SBML MML
sav00780 Biotin metabolism SBML MML
sav00785 Lipoic acid metabolism SBML MML
sav00790 Folate biosynthesis SBML MML
sav00860 Porphyrin and chlorophyll metabolism SBML MML
sav00900 Terpenoid backbone biosynthesis SBML MML
sav00903 (Undocumented) SBML MML
sav00906 Carotenoid biosynthesis SBML MML
sav00910 Nitrogen metabolism SBML MML
sav00920 Sulfur metabolism SBML MML
sav00930 Caprolactam degradation SBML MML
sav00960 (Undocumented) SBML MML
sav00970 Aminoacyl-tRNA biosynthesis SBML MML
sav00982 (Undocumented) SBML MML
sav00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.