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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sal: Sphingopyxis alaskensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sal00010 Glycolysis / Gluconeogenesis SBML MML
sal00020 Citrate cycle (TCA cycle) SBML MML
sal00030 Pentose phosphate pathway SBML MML
sal00031 (Undocumented) SBML MML
sal00040 Pentose and glucuronate interconversions SBML MML
sal00051 Fructose and mannose metabolism SBML MML
sal00052 Galactose metabolism SBML MML
sal00053 Ascorbate and aldarate metabolism SBML MML
sal00061 Fatty acid biosynthesis SBML MML
sal00062 Fatty acid elongation in mitochondria SBML MML
sal00071 Fatty acid metabolism SBML MML
sal00072 Synthesis and degradation of ketone bodies SBML MML
sal00100 (Undocumented) SBML MML
sal00120 (Undocumented) SBML MML
sal00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sal00140 (Undocumented) SBML MML
sal00150 Androgen and estrogen metabolism SBML MML
sal00220 (Undocumented) SBML MML
sal00230 Purine metabolism SBML MML
sal00240 Pyrimidine metabolism SBML MML
sal00251 (Undocumented) SBML MML
sal00252 (Undocumented) SBML MML
sal00260 Glycine, serine and threonine metabolism SBML MML
sal00271 (Undocumented) SBML MML
sal00272 (Undocumented) SBML MML
sal00280 Valine, leucine and isoleucine degradation SBML MML
sal00281 Geraniol degradation SBML MML
sal00290 Valine, leucine and isoleucine biosynthesis SBML MML
sal00300 Lysine biosynthesis SBML MML
sal00310 Lysine degradation SBML MML
sal00311 Penicillin and cephalosporin biosynthesis SBML MML
sal00330 Arginine and proline metabolism SBML MML
sal00340 Histidine metabolism SBML MML
sal00350 Tyrosine metabolism SBML MML
sal00360 Phenylalanine metabolism SBML MML
sal00361 gamma-Hexachlorocyclohexane degradation SBML MML
sal00362 (Undocumented) SBML MML
sal00364 Fluorobenzoate degradation SBML MML
sal00380 Tryptophan metabolism SBML MML
sal00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sal00401 Novobiocin biosynthesis SBML MML
sal00410 beta-Alanine metabolism SBML MML
sal00430 Taurine and hypotaurine metabolism SBML MML
sal00450 Selenoamino acid metabolism SBML MML
sal00460 (Undocumented) SBML MML
sal00471 D-Glutamine and D-glutamate metabolism SBML MML
sal00473 D-Alanine metabolism SBML MML
sal00480 Glutathione metabolism SBML MML
sal00500 Starch and sucrose metabolism SBML MML
sal00520 Amino sugar and nucleotide sugar metabolism SBML MML
sal00521 Streptomycin biosynthesis SBML MML
sal00530 (Undocumented) SBML MML
sal00550 Peptidoglycan biosynthesis SBML MML
sal00561 Glycerolipid metabolism SBML MML
sal00562 Inositol phosphate metabolism SBML MML
sal00564 Glycerophospholipid metabolism SBML MML
sal00590 Arachidonic acid metabolism SBML MML
sal00592 alpha-Linolenic acid metabolism SBML MML
sal00620 Pyruvate metabolism SBML MML
sal00627 1,4-Dichlorobenzene degradation SBML MML
sal00628 Fluorene degradation SBML MML
sal00630 Glyoxylate and dicarboxylate metabolism SBML MML
sal00632 (Undocumented) SBML MML
sal00640 Propanoate metabolism SBML MML
sal00641 3-Chloroacrylic acid degradation SBML MML
sal00650 Butanoate metabolism SBML MML
sal00660 C5-Branched dibasic acid metabolism SBML MML
sal00670 One carbon pool by folate SBML MML
sal00680 Methane metabolism SBML MML
sal00710 (Undocumented) SBML MML
sal00720 (Undocumented) SBML MML
sal00730 Thiamine metabolism SBML MML
sal00740 Riboflavin metabolism SBML MML
sal00750 Vitamin B6 metabolism SBML MML
sal00760 Nicotinate and nicotinamide metabolism SBML MML
sal00770 Pantothenate and CoA biosynthesis SBML MML
sal00780 Biotin metabolism SBML MML
sal00785 Lipoic acid metabolism SBML MML
sal00790 Folate biosynthesis SBML MML
sal00860 Porphyrin and chlorophyll metabolism SBML MML
sal00900 Terpenoid backbone biosynthesis SBML MML
sal00903 (Undocumented) SBML MML
sal00906 Carotenoid biosynthesis SBML MML
sal00910 Nitrogen metabolism SBML MML
sal00920 Sulfur metabolism SBML MML
sal00930 Caprolactam degradation SBML MML
sal00940 (Undocumented) SBML MML
sal00950 (Undocumented) SBML MML
sal00970 Aminoacyl-tRNA biosynthesis SBML MML
sal00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sal00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.