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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sab: Staphylococcus aureus RF122

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sab00010 Glycolysis / Gluconeogenesis SBML MML
sab00020 Citrate cycle (TCA cycle) SBML MML
sab00030 Pentose phosphate pathway SBML MML
sab00040 Pentose and glucuronate interconversions SBML MML
sab00051 Fructose and mannose metabolism SBML MML
sab00052 Galactose metabolism SBML MML
sab00053 Ascorbate and aldarate metabolism SBML MML
sab00061 Fatty acid biosynthesis SBML MML
sab00062 Fatty acid elongation in mitochondria SBML MML
sab00071 Fatty acid metabolism SBML MML
sab00072 Synthesis and degradation of ketone bodies SBML MML
sab00100 (Undocumented) SBML MML
sab00120 (Undocumented) SBML MML
sab00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sab00150 Androgen and estrogen metabolism SBML MML
sab00220 (Undocumented) SBML MML
sab00230 Purine metabolism SBML MML
sab00240 Pyrimidine metabolism SBML MML
sab00251 (Undocumented) SBML MML
sab00252 (Undocumented) SBML MML
sab00260 Glycine, serine and threonine metabolism SBML MML
sab00271 (Undocumented) SBML MML
sab00272 (Undocumented) SBML MML
sab00280 Valine, leucine and isoleucine degradation SBML MML
sab00281 Geraniol degradation SBML MML
sab00290 Valine, leucine and isoleucine biosynthesis SBML MML
sab00300 Lysine biosynthesis SBML MML
sab00310 Lysine degradation SBML MML
sab00330 Arginine and proline metabolism SBML MML
sab00340 Histidine metabolism SBML MML
sab00350 Tyrosine metabolism SBML MML
sab00360 Phenylalanine metabolism SBML MML
sab00361 gamma-Hexachlorocyclohexane degradation SBML MML
sab00363 Bisphenol A degradation SBML MML
sab00380 Tryptophan metabolism SBML MML
sab00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sab00410 beta-Alanine metabolism SBML MML
sab00430 Taurine and hypotaurine metabolism SBML MML
sab00450 Selenoamino acid metabolism SBML MML
sab00460 (Undocumented) SBML MML
sab00471 D-Glutamine and D-glutamate metabolism SBML MML
sab00472 D-Arginine and D-ornithine metabolism SBML MML
sab00473 D-Alanine metabolism SBML MML
sab00480 Glutathione metabolism SBML MML
sab00500 Starch and sucrose metabolism SBML MML
sab00520 Amino sugar and nucleotide sugar metabolism SBML MML
sab00521 Streptomycin biosynthesis SBML MML
sab00530 (Undocumented) SBML MML
sab00550 Peptidoglycan biosynthesis SBML MML
sab00561 Glycerolipid metabolism SBML MML
sab00562 Inositol phosphate metabolism SBML MML
sab00564 Glycerophospholipid metabolism SBML MML
sab00565 Ether lipid metabolism SBML MML
sab00590 Arachidonic acid metabolism SBML MML
sab00592 alpha-Linolenic acid metabolism SBML MML
sab00620 Pyruvate metabolism SBML MML
sab00622 Toluene and xylene degradation SBML MML
sab00624 1- and 2-Methylnaphthalene degradation SBML MML
sab00626 Naphthalene and anthracene degradation SBML MML
sab00627 1,4-Dichlorobenzene degradation SBML MML
sab00630 Glyoxylate and dicarboxylate metabolism SBML MML
sab00632 (Undocumented) SBML MML
sab00640 Propanoate metabolism SBML MML
sab00641 3-Chloroacrylic acid degradation SBML MML
sab00642 Ethylbenzene degradation SBML MML
sab00650 Butanoate metabolism SBML MML
sab00660 C5-Branched dibasic acid metabolism SBML MML
sab00670 One carbon pool by folate SBML MML
sab00680 Methane metabolism SBML MML
sab00710 (Undocumented) SBML MML
sab00720 (Undocumented) SBML MML
sab00730 Thiamine metabolism SBML MML
sab00740 Riboflavin metabolism SBML MML
sab00750 Vitamin B6 metabolism SBML MML
sab00760 Nicotinate and nicotinamide metabolism SBML MML
sab00770 Pantothenate and CoA biosynthesis SBML MML
sab00780 Biotin metabolism SBML MML
sab00785 Lipoic acid metabolism SBML MML
sab00790 Folate biosynthesis SBML MML
sab00860 Porphyrin and chlorophyll metabolism SBML MML
sab00900 Terpenoid backbone biosynthesis SBML MML
sab00903 (Undocumented) SBML MML
sab00906 Carotenoid biosynthesis SBML MML
sab00910 Nitrogen metabolism SBML MML
sab00920 Sulfur metabolism SBML MML
sab00930 Caprolactam degradation SBML MML
sab00960 (Undocumented) SBML MML
sab00970 Aminoacyl-tRNA biosynthesis SBML MML
sab00982 (Undocumented) SBML MML
sab00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.