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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism saa: Staphylococcus aureus USA300

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
saa00010 Glycolysis / Gluconeogenesis SBML MML
saa00020 Citrate cycle (TCA cycle) SBML MML
saa00030 Pentose phosphate pathway SBML MML
saa00040 Pentose and glucuronate interconversions SBML MML
saa00051 Fructose and mannose metabolism SBML MML
saa00052 Galactose metabolism SBML MML
saa00053 Ascorbate and aldarate metabolism SBML MML
saa00061 Fatty acid biosynthesis SBML MML
saa00062 Fatty acid elongation in mitochondria SBML MML
saa00071 Fatty acid metabolism SBML MML
saa00072 Synthesis and degradation of ketone bodies SBML MML
saa00100 (Undocumented) SBML MML
saa00120 (Undocumented) SBML MML
saa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
saa00150 Androgen and estrogen metabolism SBML MML
saa00220 (Undocumented) SBML MML
saa00230 Purine metabolism SBML MML
saa00240 Pyrimidine metabolism SBML MML
saa00251 (Undocumented) SBML MML
saa00252 (Undocumented) SBML MML
saa00260 Glycine, serine and threonine metabolism SBML MML
saa00271 (Undocumented) SBML MML
saa00272 (Undocumented) SBML MML
saa00280 Valine, leucine and isoleucine degradation SBML MML
saa00281 Geraniol degradation SBML MML
saa00290 Valine, leucine and isoleucine biosynthesis SBML MML
saa00300 Lysine biosynthesis SBML MML
saa00310 Lysine degradation SBML MML
saa00330 Arginine and proline metabolism SBML MML
saa00340 Histidine metabolism SBML MML
saa00350 Tyrosine metabolism SBML MML
saa00360 Phenylalanine metabolism SBML MML
saa00361 gamma-Hexachlorocyclohexane degradation SBML MML
saa00362 (Undocumented) SBML MML
saa00363 Bisphenol A degradation SBML MML
saa00380 Tryptophan metabolism SBML MML
saa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
saa00410 beta-Alanine metabolism SBML MML
saa00430 Taurine and hypotaurine metabolism SBML MML
saa00440 Phosphonate and phosphinate metabolism SBML MML
saa00450 Selenoamino acid metabolism SBML MML
saa00460 (Undocumented) SBML MML
saa00471 D-Glutamine and D-glutamate metabolism SBML MML
saa00472 D-Arginine and D-ornithine metabolism SBML MML
saa00473 D-Alanine metabolism SBML MML
saa00480 Glutathione metabolism SBML MML
saa00500 Starch and sucrose metabolism SBML MML
saa00520 Amino sugar and nucleotide sugar metabolism SBML MML
saa00521 Streptomycin biosynthesis SBML MML
saa00530 (Undocumented) SBML MML
saa00550 Peptidoglycan biosynthesis SBML MML
saa00561 Glycerolipid metabolism SBML MML
saa00562 Inositol phosphate metabolism SBML MML
saa00564 Glycerophospholipid metabolism SBML MML
saa00590 Arachidonic acid metabolism SBML MML
saa00592 alpha-Linolenic acid metabolism SBML MML
saa00620 Pyruvate metabolism SBML MML
saa00621 (Undocumented) SBML MML
saa00622 Toluene and xylene degradation SBML MML
saa00624 1- and 2-Methylnaphthalene degradation SBML MML
saa00626 Naphthalene and anthracene degradation SBML MML
saa00627 1,4-Dichlorobenzene degradation SBML MML
saa00630 Glyoxylate and dicarboxylate metabolism SBML MML
saa00632 (Undocumented) SBML MML
saa00640 Propanoate metabolism SBML MML
saa00641 3-Chloroacrylic acid degradation SBML MML
saa00642 Ethylbenzene degradation SBML MML
saa00650 Butanoate metabolism SBML MML
saa00660 C5-Branched dibasic acid metabolism SBML MML
saa00670 One carbon pool by folate SBML MML
saa00680 Methane metabolism SBML MML
saa00710 (Undocumented) SBML MML
saa00720 (Undocumented) SBML MML
saa00730 Thiamine metabolism SBML MML
saa00740 Riboflavin metabolism SBML MML
saa00750 Vitamin B6 metabolism SBML MML
saa00760 Nicotinate and nicotinamide metabolism SBML MML
saa00770 Pantothenate and CoA biosynthesis SBML MML
saa00780 Biotin metabolism SBML MML
saa00785 Lipoic acid metabolism SBML MML
saa00790 Folate biosynthesis SBML MML
saa00860 Porphyrin and chlorophyll metabolism SBML MML
saa00900 Terpenoid backbone biosynthesis SBML MML
saa00903 (Undocumented) SBML MML
saa00906 Carotenoid biosynthesis SBML MML
saa00910 Nitrogen metabolism SBML MML
saa00920 Sulfur metabolism SBML MML
saa00930 Caprolactam degradation SBML MML
saa00960 (Undocumented) SBML MML
saa00970 Aminoacyl-tRNA biosynthesis SBML MML
saa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
saa00982 (Undocumented) SBML MML
saa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.