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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rrs: Roseiflexus sp. RS-1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rrs00010 Glycolysis / Gluconeogenesis SBML MML
rrs00020 Citrate cycle (TCA cycle) SBML MML
rrs00030 Pentose phosphate pathway SBML MML
rrs00031 (Undocumented) SBML MML
rrs00040 Pentose and glucuronate interconversions SBML MML
rrs00051 Fructose and mannose metabolism SBML MML
rrs00052 Galactose metabolism SBML MML
rrs00053 Ascorbate and aldarate metabolism SBML MML
rrs00061 Fatty acid biosynthesis SBML MML
rrs00062 Fatty acid elongation in mitochondria SBML MML
rrs00071 Fatty acid metabolism SBML MML
rrs00072 Synthesis and degradation of ketone bodies SBML MML
rrs00100 (Undocumented) SBML MML
rrs00120 (Undocumented) SBML MML
rrs00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rrs00220 (Undocumented) SBML MML
rrs00230 Purine metabolism SBML MML
rrs00240 Pyrimidine metabolism SBML MML
rrs00251 (Undocumented) SBML MML
rrs00252 (Undocumented) SBML MML
rrs00260 Glycine, serine and threonine metabolism SBML MML
rrs00271 (Undocumented) SBML MML
rrs00272 (Undocumented) SBML MML
rrs00280 Valine, leucine and isoleucine degradation SBML MML
rrs00281 Geraniol degradation SBML MML
rrs00290 Valine, leucine and isoleucine biosynthesis SBML MML
rrs00300 Lysine biosynthesis SBML MML
rrs00310 Lysine degradation SBML MML
rrs00311 Penicillin and cephalosporin biosynthesis SBML MML
rrs00330 Arginine and proline metabolism SBML MML
rrs00340 Histidine metabolism SBML MML
rrs00350 Tyrosine metabolism SBML MML
rrs00360 Phenylalanine metabolism SBML MML
rrs00361 gamma-Hexachlorocyclohexane degradation SBML MML
rrs00362 (Undocumented) SBML MML
rrs00364 Fluorobenzoate degradation SBML MML
rrs00380 Tryptophan metabolism SBML MML
rrs00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rrs00401 Novobiocin biosynthesis SBML MML
rrs00410 beta-Alanine metabolism SBML MML
rrs00430 Taurine and hypotaurine metabolism SBML MML
rrs00440 Phosphonate and phosphinate metabolism SBML MML
rrs00450 Selenoamino acid metabolism SBML MML
rrs00460 (Undocumented) SBML MML
rrs00471 D-Glutamine and D-glutamate metabolism SBML MML
rrs00473 D-Alanine metabolism SBML MML
rrs00480 Glutathione metabolism SBML MML
rrs00500 Starch and sucrose metabolism SBML MML
rrs00510 (Undocumented) SBML MML
rrs00520 Amino sugar and nucleotide sugar metabolism SBML MML
rrs00521 Streptomycin biosynthesis SBML MML
rrs00523 Polyketide sugar unit biosynthesis SBML MML
rrs00530 (Undocumented) SBML MML
rrs00540 Lipopolysaccharide biosynthesis SBML MML
rrs00550 Peptidoglycan biosynthesis SBML MML
rrs00561 Glycerolipid metabolism SBML MML
rrs00562 Inositol phosphate metabolism SBML MML
rrs00564 Glycerophospholipid metabolism SBML MML
rrs00590 Arachidonic acid metabolism SBML MML
rrs00592 alpha-Linolenic acid metabolism SBML MML
rrs00600 Sphingolipid metabolism SBML MML
rrs00620 Pyruvate metabolism SBML MML
rrs00622 Toluene and xylene degradation SBML MML
rrs00624 1- and 2-Methylnaphthalene degradation SBML MML
rrs00626 Naphthalene and anthracene degradation SBML MML
rrs00627 1,4-Dichlorobenzene degradation SBML MML
rrs00628 Fluorene degradation SBML MML
rrs00629 Carbazole degradation SBML MML
rrs00630 Glyoxylate and dicarboxylate metabolism SBML MML
rrs00631 1,2-Dichloroethane degradation SBML MML
rrs00632 (Undocumented) SBML MML
rrs00640 Propanoate metabolism SBML MML
rrs00641 3-Chloroacrylic acid degradation SBML MML
rrs00642 Ethylbenzene degradation SBML MML
rrs00643 Styrene degradation SBML MML
rrs00650 Butanoate metabolism SBML MML
rrs00660 C5-Branched dibasic acid metabolism SBML MML
rrs00670 One carbon pool by folate SBML MML
rrs00680 Methane metabolism SBML MML
rrs00710 (Undocumented) SBML MML
rrs00720 (Undocumented) SBML MML
rrs00730 Thiamine metabolism SBML MML
rrs00740 Riboflavin metabolism SBML MML
rrs00750 Vitamin B6 metabolism SBML MML
rrs00760 Nicotinate and nicotinamide metabolism SBML MML
rrs00770 Pantothenate and CoA biosynthesis SBML MML
rrs00780 Biotin metabolism SBML MML
rrs00785 Lipoic acid metabolism SBML MML
rrs00790 Folate biosynthesis SBML MML
rrs00860 Porphyrin and chlorophyll metabolism SBML MML
rrs00900 Terpenoid backbone biosynthesis SBML MML
rrs00903 (Undocumented) SBML MML
rrs00906 Carotenoid biosynthesis SBML MML
rrs00910 Nitrogen metabolism SBML MML
rrs00920 Sulfur metabolism SBML MML
rrs00930 Caprolactam degradation SBML MML
rrs00940 (Undocumented) SBML MML
rrs00941 (Undocumented) SBML MML
rrs00960 (Undocumented) SBML MML
rrs00970 Aminoacyl-tRNA biosynthesis SBML MML
rrs00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rrs00982 (Undocumented) SBML MML
rrs00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.