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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpt: Rhodopseudomonas palustris TIE-1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpt00010 Glycolysis / Gluconeogenesis SBML MML
rpt00020 Citrate cycle (TCA cycle) SBML MML
rpt00030 Pentose phosphate pathway SBML MML
rpt00031 (Undocumented) SBML MML
rpt00040 Pentose and glucuronate interconversions SBML MML
rpt00051 Fructose and mannose metabolism SBML MML
rpt00052 Galactose metabolism SBML MML
rpt00053 Ascorbate and aldarate metabolism SBML MML
rpt00061 Fatty acid biosynthesis SBML MML
rpt00062 Fatty acid elongation in mitochondria SBML MML
rpt00071 Fatty acid metabolism SBML MML
rpt00072 Synthesis and degradation of ketone bodies SBML MML
rpt00100 (Undocumented) SBML MML
rpt00120 (Undocumented) SBML MML
rpt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpt00220 (Undocumented) SBML MML
rpt00230 Purine metabolism SBML MML
rpt00240 Pyrimidine metabolism SBML MML
rpt00251 (Undocumented) SBML MML
rpt00252 (Undocumented) SBML MML
rpt00260 Glycine, serine and threonine metabolism SBML MML
rpt00271 (Undocumented) SBML MML
rpt00272 (Undocumented) SBML MML
rpt00280 Valine, leucine and isoleucine degradation SBML MML
rpt00281 Geraniol degradation SBML MML
rpt00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpt00300 Lysine biosynthesis SBML MML
rpt00310 Lysine degradation SBML MML
rpt00330 Arginine and proline metabolism SBML MML
rpt00340 Histidine metabolism SBML MML
rpt00350 Tyrosine metabolism SBML MML
rpt00360 Phenylalanine metabolism SBML MML
rpt00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpt00362 (Undocumented) SBML MML
rpt00364 Fluorobenzoate degradation SBML MML
rpt00380 Tryptophan metabolism SBML MML
rpt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpt00401 Novobiocin biosynthesis SBML MML
rpt00410 beta-Alanine metabolism SBML MML
rpt00430 Taurine and hypotaurine metabolism SBML MML
rpt00440 Phosphonate and phosphinate metabolism SBML MML
rpt00450 Selenoamino acid metabolism SBML MML
rpt00460 (Undocumented) SBML MML
rpt00471 D-Glutamine and D-glutamate metabolism SBML MML
rpt00472 D-Arginine and D-ornithine metabolism SBML MML
rpt00473 D-Alanine metabolism SBML MML
rpt00480 Glutathione metabolism SBML MML
rpt00500 Starch and sucrose metabolism SBML MML
rpt00510 (Undocumented) SBML MML
rpt00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpt00521 Streptomycin biosynthesis SBML MML
rpt00523 Polyketide sugar unit biosynthesis SBML MML
rpt00530 (Undocumented) SBML MML
rpt00540 Lipopolysaccharide biosynthesis SBML MML
rpt00550 Peptidoglycan biosynthesis SBML MML
rpt00561 Glycerolipid metabolism SBML MML
rpt00562 Inositol phosphate metabolism SBML MML
rpt00564 Glycerophospholipid metabolism SBML MML
rpt00590 Arachidonic acid metabolism SBML MML
rpt00592 alpha-Linolenic acid metabolism SBML MML
rpt00620 Pyruvate metabolism SBML MML
rpt00622 Toluene and xylene degradation SBML MML
rpt00623 2,4-Dichlorobenzoate degradation SBML MML
rpt00624 1- and 2-Methylnaphthalene degradation SBML MML
rpt00625 (Undocumented) SBML MML
rpt00626 Naphthalene and anthracene degradation SBML MML
rpt00627 1,4-Dichlorobenzene degradation SBML MML
rpt00628 Fluorene degradation SBML MML
rpt00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpt00631 1,2-Dichloroethane degradation SBML MML
rpt00632 (Undocumented) SBML MML
rpt00633 Trinitrotoluene degradation SBML MML
rpt00640 Propanoate metabolism SBML MML
rpt00641 3-Chloroacrylic acid degradation SBML MML
rpt00642 Ethylbenzene degradation SBML MML
rpt00643 Styrene degradation SBML MML
rpt00650 Butanoate metabolism SBML MML
rpt00660 C5-Branched dibasic acid metabolism SBML MML
rpt00670 One carbon pool by folate SBML MML
rpt00680 Methane metabolism SBML MML
rpt00710 (Undocumented) SBML MML
rpt00720 (Undocumented) SBML MML
rpt00730 Thiamine metabolism SBML MML
rpt00740 Riboflavin metabolism SBML MML
rpt00750 Vitamin B6 metabolism SBML MML
rpt00760 Nicotinate and nicotinamide metabolism SBML MML
rpt00770 Pantothenate and CoA biosynthesis SBML MML
rpt00780 Biotin metabolism SBML MML
rpt00790 Folate biosynthesis SBML MML
rpt00791 Atrazine degradation SBML MML
rpt00860 Porphyrin and chlorophyll metabolism SBML MML
rpt00900 Terpenoid backbone biosynthesis SBML MML
rpt00903 (Undocumented) SBML MML
rpt00906 Carotenoid biosynthesis SBML MML
rpt00910 Nitrogen metabolism SBML MML
rpt00920 Sulfur metabolism SBML MML
rpt00930 Caprolactam degradation SBML MML
rpt00940 (Undocumented) SBML MML
rpt00950 (Undocumented) SBML MML
rpt00960 (Undocumented) SBML MML
rpt00970 Aminoacyl-tRNA biosynthesis SBML MML
rpt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpt00982 (Undocumented) SBML MML
rpt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.