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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rpa: Rhodopseudomonas palustris CGA009

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rpa00010 Glycolysis / Gluconeogenesis SBML MML
rpa00020 Citrate cycle (TCA cycle) SBML MML
rpa00030 Pentose phosphate pathway SBML MML
rpa00031 (Undocumented) SBML MML
rpa00040 Pentose and glucuronate interconversions SBML MML
rpa00051 Fructose and mannose metabolism SBML MML
rpa00052 Galactose metabolism SBML MML
rpa00053 Ascorbate and aldarate metabolism SBML MML
rpa00061 Fatty acid biosynthesis SBML MML
rpa00062 Fatty acid elongation in mitochondria SBML MML
rpa00071 Fatty acid metabolism SBML MML
rpa00072 Synthesis and degradation of ketone bodies SBML MML
rpa00100 (Undocumented) SBML MML
rpa00120 (Undocumented) SBML MML
rpa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rpa00220 (Undocumented) SBML MML
rpa00230 Purine metabolism SBML MML
rpa00240 Pyrimidine metabolism SBML MML
rpa00251 (Undocumented) SBML MML
rpa00252 (Undocumented) SBML MML
rpa00260 Glycine, serine and threonine metabolism SBML MML
rpa00271 (Undocumented) SBML MML
rpa00272 (Undocumented) SBML MML
rpa00280 Valine, leucine and isoleucine degradation SBML MML
rpa00281 Geraniol degradation SBML MML
rpa00290 Valine, leucine and isoleucine biosynthesis SBML MML
rpa00300 Lysine biosynthesis SBML MML
rpa00310 Lysine degradation SBML MML
rpa00330 Arginine and proline metabolism SBML MML
rpa00340 Histidine metabolism SBML MML
rpa00350 Tyrosine metabolism SBML MML
rpa00360 Phenylalanine metabolism SBML MML
rpa00361 gamma-Hexachlorocyclohexane degradation SBML MML
rpa00362 (Undocumented) SBML MML
rpa00364 Fluorobenzoate degradation SBML MML
rpa00380 Tryptophan metabolism SBML MML
rpa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rpa00401 Novobiocin biosynthesis SBML MML
rpa00410 beta-Alanine metabolism SBML MML
rpa00430 Taurine and hypotaurine metabolism SBML MML
rpa00440 Phosphonate and phosphinate metabolism SBML MML
rpa00450 Selenoamino acid metabolism SBML MML
rpa00460 (Undocumented) SBML MML
rpa00471 D-Glutamine and D-glutamate metabolism SBML MML
rpa00472 D-Arginine and D-ornithine metabolism SBML MML
rpa00473 D-Alanine metabolism SBML MML
rpa00480 Glutathione metabolism SBML MML
rpa00500 Starch and sucrose metabolism SBML MML
rpa00510 (Undocumented) SBML MML
rpa00520 Amino sugar and nucleotide sugar metabolism SBML MML
rpa00521 Streptomycin biosynthesis SBML MML
rpa00523 Polyketide sugar unit biosynthesis SBML MML
rpa00530 (Undocumented) SBML MML
rpa00540 Lipopolysaccharide biosynthesis SBML MML
rpa00550 Peptidoglycan biosynthesis SBML MML
rpa00561 Glycerolipid metabolism SBML MML
rpa00562 Inositol phosphate metabolism SBML MML
rpa00564 Glycerophospholipid metabolism SBML MML
rpa00590 Arachidonic acid metabolism SBML MML
rpa00592 alpha-Linolenic acid metabolism SBML MML
rpa00620 Pyruvate metabolism SBML MML
rpa00622 Toluene and xylene degradation SBML MML
rpa00623 2,4-Dichlorobenzoate degradation SBML MML
rpa00624 1- and 2-Methylnaphthalene degradation SBML MML
rpa00625 (Undocumented) SBML MML
rpa00626 Naphthalene and anthracene degradation SBML MML
rpa00627 1,4-Dichlorobenzene degradation SBML MML
rpa00628 Fluorene degradation SBML MML
rpa00630 Glyoxylate and dicarboxylate metabolism SBML MML
rpa00631 1,2-Dichloroethane degradation SBML MML
rpa00632 (Undocumented) SBML MML
rpa00633 Trinitrotoluene degradation SBML MML
rpa00640 Propanoate metabolism SBML MML
rpa00641 3-Chloroacrylic acid degradation SBML MML
rpa00642 Ethylbenzene degradation SBML MML
rpa00643 Styrene degradation SBML MML
rpa00650 Butanoate metabolism SBML MML
rpa00660 C5-Branched dibasic acid metabolism SBML MML
rpa00670 One carbon pool by folate SBML MML
rpa00680 Methane metabolism SBML MML
rpa00710 (Undocumented) SBML MML
rpa00720 (Undocumented) SBML MML
rpa00730 Thiamine metabolism SBML MML
rpa00740 Riboflavin metabolism SBML MML
rpa00750 Vitamin B6 metabolism SBML MML
rpa00760 Nicotinate and nicotinamide metabolism SBML MML
rpa00770 Pantothenate and CoA biosynthesis SBML MML
rpa00780 Biotin metabolism SBML MML
rpa00785 Lipoic acid metabolism SBML MML
rpa00790 Folate biosynthesis SBML MML
rpa00860 Porphyrin and chlorophyll metabolism SBML MML
rpa00900 Terpenoid backbone biosynthesis SBML MML
rpa00903 (Undocumented) SBML MML
rpa00906 Carotenoid biosynthesis SBML MML
rpa00910 Nitrogen metabolism SBML MML
rpa00920 Sulfur metabolism SBML MML
rpa00930 Caprolactam degradation SBML MML
rpa00940 (Undocumented) SBML MML
rpa00950 (Undocumented) SBML MML
rpa00960 (Undocumented) SBML MML
rpa00970 Aminoacyl-tRNA biosynthesis SBML MML
rpa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rpa00982 (Undocumented) SBML MML
rpa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.