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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rms: Rickettsia massiliae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rms00010 Glycolysis / Gluconeogenesis SBML MML
rms00020 Citrate cycle (TCA cycle) SBML MML
rms00030 Pentose phosphate pathway SBML MML
rms00061 Fatty acid biosynthesis SBML MML
rms00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rms00230 Purine metabolism SBML MML
rms00240 Pyrimidine metabolism SBML MML
rms00251 (Undocumented) SBML MML
rms00252 (Undocumented) SBML MML
rms00260 Glycine, serine and threonine metabolism SBML MML
rms00271 (Undocumented) SBML MML
rms00272 (Undocumented) SBML MML
rms00280 Valine, leucine and isoleucine degradation SBML MML
rms00290 Valine, leucine and isoleucine biosynthesis SBML MML
rms00300 Lysine biosynthesis SBML MML
rms00310 Lysine degradation SBML MML
rms00330 Arginine and proline metabolism SBML MML
rms00340 Histidine metabolism SBML MML
rms00350 Tyrosine metabolism SBML MML
rms00380 Tryptophan metabolism SBML MML
rms00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rms00450 Selenoamino acid metabolism SBML MML
rms00471 D-Glutamine and D-glutamate metabolism SBML MML
rms00473 D-Alanine metabolism SBML MML
rms00480 Glutathione metabolism SBML MML
rms00520 Amino sugar and nucleotide sugar metabolism SBML MML
rms00521 Streptomycin biosynthesis SBML MML
rms00530 (Undocumented) SBML MML
rms00540 Lipopolysaccharide biosynthesis SBML MML
rms00550 Peptidoglycan biosynthesis SBML MML
rms00562 Inositol phosphate metabolism SBML MML
rms00564 Glycerophospholipid metabolism SBML MML
rms00620 Pyruvate metabolism SBML MML
rms00630 Glyoxylate and dicarboxylate metabolism SBML MML
rms00640 Propanoate metabolism SBML MML
rms00650 Butanoate metabolism SBML MML
rms00670 One carbon pool by folate SBML MML
rms00710 (Undocumented) SBML MML
rms00720 (Undocumented) SBML MML
rms00760 Nicotinate and nicotinamide metabolism SBML MML
rms00770 Pantothenate and CoA biosynthesis SBML MML
rms00780 Biotin metabolism SBML MML
rms00785 Lipoic acid metabolism SBML MML
rms00790 Folate biosynthesis SBML MML
rms00791 Atrazine degradation SBML MML
rms00860 Porphyrin and chlorophyll metabolism SBML MML
rms00900 Terpenoid backbone biosynthesis SBML MML
rms00910 Nitrogen metabolism SBML MML
rms00970 Aminoacyl-tRNA biosynthesis SBML MML
rms00980 Metabolism of xenobiotics by cytochrome P450 SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.