This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rha: Rhodococcus sp. RHA1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rha00010 Glycolysis / Gluconeogenesis SBML MML
rha00020 Citrate cycle (TCA cycle) SBML MML
rha00030 Pentose phosphate pathway SBML MML
rha00031 (Undocumented) SBML MML
rha00040 Pentose and glucuronate interconversions SBML MML
rha00051 Fructose and mannose metabolism SBML MML
rha00052 Galactose metabolism SBML MML
rha00053 Ascorbate and aldarate metabolism SBML MML
rha00061 Fatty acid biosynthesis SBML MML
rha00062 Fatty acid elongation in mitochondria SBML MML
rha00071 Fatty acid metabolism SBML MML
rha00072 Synthesis and degradation of ketone bodies SBML MML
rha00100 (Undocumented) SBML MML
rha00120 (Undocumented) SBML MML
rha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rha00140 (Undocumented) SBML MML
rha00150 Androgen and estrogen metabolism SBML MML
rha00220 (Undocumented) SBML MML
rha00230 Purine metabolism SBML MML
rha00232 Caffeine metabolism SBML MML
rha00240 Pyrimidine metabolism SBML MML
rha00251 (Undocumented) SBML MML
rha00252 (Undocumented) SBML MML
rha00260 Glycine, serine and threonine metabolism SBML MML
rha00271 (Undocumented) SBML MML
rha00272 (Undocumented) SBML MML
rha00280 Valine, leucine and isoleucine degradation SBML MML
rha00281 Geraniol degradation SBML MML
rha00290 Valine, leucine and isoleucine biosynthesis SBML MML
rha00300 Lysine biosynthesis SBML MML
rha00310 Lysine degradation SBML MML
rha00311 Penicillin and cephalosporin biosynthesis SBML MML
rha00330 Arginine and proline metabolism SBML MML
rha00340 Histidine metabolism SBML MML
rha00350 Tyrosine metabolism SBML MML
rha00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
rha00360 Phenylalanine metabolism SBML MML
rha00361 gamma-Hexachlorocyclohexane degradation SBML MML
rha00362 (Undocumented) SBML MML
rha00363 Bisphenol A degradation SBML MML
rha00364 Fluorobenzoate degradation SBML MML
rha00380 Tryptophan metabolism SBML MML
rha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rha00401 Novobiocin biosynthesis SBML MML
rha00410 beta-Alanine metabolism SBML MML
rha00430 Taurine and hypotaurine metabolism SBML MML
rha00450 Selenoamino acid metabolism SBML MML
rha00460 (Undocumented) SBML MML
rha00471 D-Glutamine and D-glutamate metabolism SBML MML
rha00473 D-Alanine metabolism SBML MML
rha00480 Glutathione metabolism SBML MML
rha00500 Starch and sucrose metabolism SBML MML
rha00510 (Undocumented) SBML MML
rha00520 Amino sugar and nucleotide sugar metabolism SBML MML
rha00521 Streptomycin biosynthesis SBML MML
rha00523 Polyketide sugar unit biosynthesis SBML MML
rha00530 (Undocumented) SBML MML
rha00540 Lipopolysaccharide biosynthesis SBML MML
rha00550 Peptidoglycan biosynthesis SBML MML
rha00561 Glycerolipid metabolism SBML MML
rha00562 Inositol phosphate metabolism SBML MML
rha00564 Glycerophospholipid metabolism SBML MML
rha00565 Ether lipid metabolism SBML MML
rha00590 Arachidonic acid metabolism SBML MML
rha00591 Linoleic acid metabolism SBML MML
rha00592 alpha-Linolenic acid metabolism SBML MML
rha00620 Pyruvate metabolism SBML MML
rha00621 (Undocumented) SBML MML
rha00622 Toluene and xylene degradation SBML MML
rha00623 2,4-Dichlorobenzoate degradation SBML MML
rha00624 1- and 2-Methylnaphthalene degradation SBML MML
rha00626 Naphthalene and anthracene degradation SBML MML
rha00627 1,4-Dichlorobenzene degradation SBML MML
rha00628 Fluorene degradation SBML MML
rha00629 Carbazole degradation SBML MML
rha00630 Glyoxylate and dicarboxylate metabolism SBML MML
rha00631 1,2-Dichloroethane degradation SBML MML
rha00632 (Undocumented) SBML MML
rha00640 Propanoate metabolism SBML MML
rha00641 3-Chloroacrylic acid degradation SBML MML
rha00642 Ethylbenzene degradation SBML MML
rha00643 Styrene degradation SBML MML
rha00650 Butanoate metabolism SBML MML
rha00660 C5-Branched dibasic acid metabolism SBML MML
rha00670 One carbon pool by folate SBML MML
rha00680 Methane metabolism SBML MML
rha00710 (Undocumented) SBML MML
rha00720 (Undocumented) SBML MML
rha00730 Thiamine metabolism SBML MML
rha00740 Riboflavin metabolism SBML MML
rha00750 Vitamin B6 metabolism SBML MML
rha00760 Nicotinate and nicotinamide metabolism SBML MML
rha00770 Pantothenate and CoA biosynthesis SBML MML
rha00780 Biotin metabolism SBML MML
rha00785 Lipoic acid metabolism SBML MML
rha00790 Folate biosynthesis SBML MML
rha00791 Atrazine degradation SBML MML
rha00860 Porphyrin and chlorophyll metabolism SBML MML
rha00900 Terpenoid backbone biosynthesis SBML MML
rha00902 Monoterpenoid biosynthesis SBML MML
rha00903 (Undocumented) SBML MML
rha00906 Carotenoid biosynthesis SBML MML
rha00910 Nitrogen metabolism SBML MML
rha00920 Sulfur metabolism SBML MML
rha00930 Caprolactam degradation SBML MML
rha00940 (Undocumented) SBML MML
rha00950 (Undocumented) SBML MML
rha00960 (Undocumented) SBML MML
rha00970 Aminoacyl-tRNA biosynthesis SBML MML
rha00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rha00982 (Undocumented) SBML MML
rha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.