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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism reu: Ralstonia eutropha JMP134

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
reu00010 Glycolysis / Gluconeogenesis SBML MML
reu00020 Citrate cycle (TCA cycle) SBML MML
reu00030 Pentose phosphate pathway SBML MML
reu00031 (Undocumented) SBML MML
reu00040 Pentose and glucuronate interconversions SBML MML
reu00051 Fructose and mannose metabolism SBML MML
reu00052 Galactose metabolism SBML MML
reu00053 Ascorbate and aldarate metabolism SBML MML
reu00061 Fatty acid biosynthesis SBML MML
reu00062 Fatty acid elongation in mitochondria SBML MML
reu00071 Fatty acid metabolism SBML MML
reu00072 Synthesis and degradation of ketone bodies SBML MML
reu00100 (Undocumented) SBML MML
reu00120 (Undocumented) SBML MML
reu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
reu00150 Androgen and estrogen metabolism SBML MML
reu00220 (Undocumented) SBML MML
reu00230 Purine metabolism SBML MML
reu00240 Pyrimidine metabolism SBML MML
reu00251 (Undocumented) SBML MML
reu00252 (Undocumented) SBML MML
reu00260 Glycine, serine and threonine metabolism SBML MML
reu00271 (Undocumented) SBML MML
reu00272 (Undocumented) SBML MML
reu00280 Valine, leucine and isoleucine degradation SBML MML
reu00281 Geraniol degradation SBML MML
reu00290 Valine, leucine and isoleucine biosynthesis SBML MML
reu00300 Lysine biosynthesis SBML MML
reu00310 Lysine degradation SBML MML
reu00311 Penicillin and cephalosporin biosynthesis SBML MML
reu00330 Arginine and proline metabolism SBML MML
reu00340 Histidine metabolism SBML MML
reu00350 Tyrosine metabolism SBML MML
reu00360 Phenylalanine metabolism SBML MML
reu00361 gamma-Hexachlorocyclohexane degradation SBML MML
reu00362 (Undocumented) SBML MML
reu00363 Bisphenol A degradation SBML MML
reu00364 Fluorobenzoate degradation SBML MML
reu00380 Tryptophan metabolism SBML MML
reu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
reu00401 Novobiocin biosynthesis SBML MML
reu00410 beta-Alanine metabolism SBML MML
reu00430 Taurine and hypotaurine metabolism SBML MML
reu00440 Phosphonate and phosphinate metabolism SBML MML
reu00450 Selenoamino acid metabolism SBML MML
reu00460 (Undocumented) SBML MML
reu00471 D-Glutamine and D-glutamate metabolism SBML MML
reu00472 D-Arginine and D-ornithine metabolism SBML MML
reu00473 D-Alanine metabolism SBML MML
reu00480 Glutathione metabolism SBML MML
reu00500 Starch and sucrose metabolism SBML MML
reu00520 Amino sugar and nucleotide sugar metabolism SBML MML
reu00521 Streptomycin biosynthesis SBML MML
reu00523 Polyketide sugar unit biosynthesis SBML MML
reu00530 (Undocumented) SBML MML
reu00540 Lipopolysaccharide biosynthesis SBML MML
reu00550 Peptidoglycan biosynthesis SBML MML
reu00561 Glycerolipid metabolism SBML MML
reu00562 Inositol phosphate metabolism SBML MML
reu00564 Glycerophospholipid metabolism SBML MML
reu00565 Ether lipid metabolism SBML MML
reu00590 Arachidonic acid metabolism SBML MML
reu00592 alpha-Linolenic acid metabolism SBML MML
reu00600 Sphingolipid metabolism SBML MML
reu00620 Pyruvate metabolism SBML MML
reu00621 (Undocumented) SBML MML
reu00622 Toluene and xylene degradation SBML MML
reu00623 2,4-Dichlorobenzoate degradation SBML MML
reu00624 1- and 2-Methylnaphthalene degradation SBML MML
reu00626 Naphthalene and anthracene degradation SBML MML
reu00627 1,4-Dichlorobenzene degradation SBML MML
reu00628 Fluorene degradation SBML MML
reu00629 Carbazole degradation SBML MML
reu00630 Glyoxylate and dicarboxylate metabolism SBML MML
reu00631 1,2-Dichloroethane degradation SBML MML
reu00632 (Undocumented) SBML MML
reu00640 Propanoate metabolism SBML MML
reu00641 3-Chloroacrylic acid degradation SBML MML
reu00642 Ethylbenzene degradation SBML MML
reu00643 Styrene degradation SBML MML
reu00650 Butanoate metabolism SBML MML
reu00660 C5-Branched dibasic acid metabolism SBML MML
reu00670 One carbon pool by folate SBML MML
reu00680 Methane metabolism SBML MML
reu00710 (Undocumented) SBML MML
reu00720 (Undocumented) SBML MML
reu00730 Thiamine metabolism SBML MML
reu00740 Riboflavin metabolism SBML MML
reu00750 Vitamin B6 metabolism SBML MML
reu00760 Nicotinate and nicotinamide metabolism SBML MML
reu00770 Pantothenate and CoA biosynthesis SBML MML
reu00780 Biotin metabolism SBML MML
reu00785 Lipoic acid metabolism SBML MML
reu00790 Folate biosynthesis SBML MML
reu00791 Atrazine degradation SBML MML
reu00860 Porphyrin and chlorophyll metabolism SBML MML
reu00900 Terpenoid backbone biosynthesis SBML MML
reu00903 (Undocumented) SBML MML
reu00910 Nitrogen metabolism SBML MML
reu00920 Sulfur metabolism SBML MML
reu00930 Caprolactam degradation SBML MML
reu00940 (Undocumented) SBML MML
reu00941 (Undocumented) SBML MML
reu00950 (Undocumented) SBML MML
reu00960 (Undocumented) SBML MML
reu00970 Aminoacyl-tRNA biosynthesis SBML MML
reu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
reu00982 (Undocumented) SBML MML
reu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.