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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism reh: Ralstonia eutropha H16

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
reh00010 Glycolysis / Gluconeogenesis SBML MML
reh00020 Citrate cycle (TCA cycle) SBML MML
reh00030 Pentose phosphate pathway SBML MML
reh00031 (Undocumented) SBML MML
reh00040 Pentose and glucuronate interconversions SBML MML
reh00051 Fructose and mannose metabolism SBML MML
reh00052 Galactose metabolism SBML MML
reh00053 Ascorbate and aldarate metabolism SBML MML
reh00061 Fatty acid biosynthesis SBML MML
reh00062 Fatty acid elongation in mitochondria SBML MML
reh00071 Fatty acid metabolism SBML MML
reh00072 Synthesis and degradation of ketone bodies SBML MML
reh00100 (Undocumented) SBML MML
reh00120 (Undocumented) SBML MML
reh00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
reh00140 (Undocumented) SBML MML
reh00150 Androgen and estrogen metabolism SBML MML
reh00220 (Undocumented) SBML MML
reh00230 Purine metabolism SBML MML
reh00240 Pyrimidine metabolism SBML MML
reh00251 (Undocumented) SBML MML
reh00252 (Undocumented) SBML MML
reh00260 Glycine, serine and threonine metabolism SBML MML
reh00271 (Undocumented) SBML MML
reh00272 (Undocumented) SBML MML
reh00280 Valine, leucine and isoleucine degradation SBML MML
reh00281 Geraniol degradation SBML MML
reh00290 Valine, leucine and isoleucine biosynthesis SBML MML
reh00300 Lysine biosynthesis SBML MML
reh00310 Lysine degradation SBML MML
reh00311 Penicillin and cephalosporin biosynthesis SBML MML
reh00330 Arginine and proline metabolism SBML MML
reh00340 Histidine metabolism SBML MML
reh00350 Tyrosine metabolism SBML MML
reh00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
reh00360 Phenylalanine metabolism SBML MML
reh00361 gamma-Hexachlorocyclohexane degradation SBML MML
reh00362 (Undocumented) SBML MML
reh00363 Bisphenol A degradation SBML MML
reh00364 Fluorobenzoate degradation SBML MML
reh00380 Tryptophan metabolism SBML MML
reh00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
reh00401 Novobiocin biosynthesis SBML MML
reh00410 beta-Alanine metabolism SBML MML
reh00430 Taurine and hypotaurine metabolism SBML MML
reh00440 Phosphonate and phosphinate metabolism SBML MML
reh00450 Selenoamino acid metabolism SBML MML
reh00460 (Undocumented) SBML MML
reh00471 D-Glutamine and D-glutamate metabolism SBML MML
reh00472 D-Arginine and D-ornithine metabolism SBML MML
reh00473 D-Alanine metabolism SBML MML
reh00480 Glutathione metabolism SBML MML
reh00500 Starch and sucrose metabolism SBML MML
reh00520 Amino sugar and nucleotide sugar metabolism SBML MML
reh00521 Streptomycin biosynthesis SBML MML
reh00523 Polyketide sugar unit biosynthesis SBML MML
reh00530 (Undocumented) SBML MML
reh00540 Lipopolysaccharide biosynthesis SBML MML
reh00550 Peptidoglycan biosynthesis SBML MML
reh00561 Glycerolipid metabolism SBML MML
reh00562 Inositol phosphate metabolism SBML MML
reh00564 Glycerophospholipid metabolism SBML MML
reh00565 Ether lipid metabolism SBML MML
reh00590 Arachidonic acid metabolism SBML MML
reh00592 alpha-Linolenic acid metabolism SBML MML
reh00600 Sphingolipid metabolism SBML MML
reh00620 Pyruvate metabolism SBML MML
reh00621 (Undocumented) SBML MML
reh00622 Toluene and xylene degradation SBML MML
reh00623 2,4-Dichlorobenzoate degradation SBML MML
reh00624 1- and 2-Methylnaphthalene degradation SBML MML
reh00626 Naphthalene and anthracene degradation SBML MML
reh00627 1,4-Dichlorobenzene degradation SBML MML
reh00628 Fluorene degradation SBML MML
reh00629 Carbazole degradation SBML MML
reh00630 Glyoxylate and dicarboxylate metabolism SBML MML
reh00631 1,2-Dichloroethane degradation SBML MML
reh00632 (Undocumented) SBML MML
reh00633 Trinitrotoluene degradation SBML MML
reh00640 Propanoate metabolism SBML MML
reh00641 3-Chloroacrylic acid degradation SBML MML
reh00642 Ethylbenzene degradation SBML MML
reh00643 Styrene degradation SBML MML
reh00650 Butanoate metabolism SBML MML
reh00660 C5-Branched dibasic acid metabolism SBML MML
reh00670 One carbon pool by folate SBML MML
reh00680 Methane metabolism SBML MML
reh00710 (Undocumented) SBML MML
reh00720 (Undocumented) SBML MML
reh00730 Thiamine metabolism SBML MML
reh00740 Riboflavin metabolism SBML MML
reh00750 Vitamin B6 metabolism SBML MML
reh00760 Nicotinate and nicotinamide metabolism SBML MML
reh00770 Pantothenate and CoA biosynthesis SBML MML
reh00780 Biotin metabolism SBML MML
reh00785 Lipoic acid metabolism SBML MML
reh00790 Folate biosynthesis SBML MML
reh00791 Atrazine degradation SBML MML
reh00860 Porphyrin and chlorophyll metabolism SBML MML
reh00900 Terpenoid backbone biosynthesis SBML MML
reh00903 (Undocumented) SBML MML
reh00910 Nitrogen metabolism SBML MML
reh00920 Sulfur metabolism SBML MML
reh00930 Caprolactam degradation SBML MML
reh00940 (Undocumented) SBML MML
reh00941 (Undocumented) SBML MML
reh00950 (Undocumented) SBML MML
reh00960 (Undocumented) SBML MML
reh00970 Aminoacyl-tRNA biosynthesis SBML MML
reh00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
reh00982 (Undocumented) SBML MML
reh00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.