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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism rca: Roseiflexus castenholzii DSM13941

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
rca00010 Glycolysis / Gluconeogenesis SBML MML
rca00020 Citrate cycle (TCA cycle) SBML MML
rca00030 Pentose phosphate pathway SBML MML
rca00031 (Undocumented) SBML MML
rca00040 Pentose and glucuronate interconversions SBML MML
rca00051 Fructose and mannose metabolism SBML MML
rca00052 Galactose metabolism SBML MML
rca00053 Ascorbate and aldarate metabolism SBML MML
rca00061 Fatty acid biosynthesis SBML MML
rca00062 Fatty acid elongation in mitochondria SBML MML
rca00071 Fatty acid metabolism SBML MML
rca00072 Synthesis and degradation of ketone bodies SBML MML
rca00100 (Undocumented) SBML MML
rca00120 (Undocumented) SBML MML
rca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
rca00220 (Undocumented) SBML MML
rca00230 Purine metabolism SBML MML
rca00240 Pyrimidine metabolism SBML MML
rca00251 (Undocumented) SBML MML
rca00252 (Undocumented) SBML MML
rca00260 Glycine, serine and threonine metabolism SBML MML
rca00271 (Undocumented) SBML MML
rca00272 (Undocumented) SBML MML
rca00280 Valine, leucine and isoleucine degradation SBML MML
rca00281 Geraniol degradation SBML MML
rca00290 Valine, leucine and isoleucine biosynthesis SBML MML
rca00300 Lysine biosynthesis SBML MML
rca00310 Lysine degradation SBML MML
rca00311 Penicillin and cephalosporin biosynthesis SBML MML
rca00330 Arginine and proline metabolism SBML MML
rca00340 Histidine metabolism SBML MML
rca00350 Tyrosine metabolism SBML MML
rca00360 Phenylalanine metabolism SBML MML
rca00361 gamma-Hexachlorocyclohexane degradation SBML MML
rca00362 (Undocumented) SBML MML
rca00364 Fluorobenzoate degradation SBML MML
rca00380 Tryptophan metabolism SBML MML
rca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
rca00401 Novobiocin biosynthesis SBML MML
rca00410 beta-Alanine metabolism SBML MML
rca00430 Taurine and hypotaurine metabolism SBML MML
rca00440 Phosphonate and phosphinate metabolism SBML MML
rca00450 Selenoamino acid metabolism SBML MML
rca00460 (Undocumented) SBML MML
rca00471 D-Glutamine and D-glutamate metabolism SBML MML
rca00473 D-Alanine metabolism SBML MML
rca00480 Glutathione metabolism SBML MML
rca00500 Starch and sucrose metabolism SBML MML
rca00510 (Undocumented) SBML MML
rca00520 Amino sugar and nucleotide sugar metabolism SBML MML
rca00521 Streptomycin biosynthesis SBML MML
rca00523 Polyketide sugar unit biosynthesis SBML MML
rca00530 (Undocumented) SBML MML
rca00540 Lipopolysaccharide biosynthesis SBML MML
rca00550 Peptidoglycan biosynthesis SBML MML
rca00561 Glycerolipid metabolism SBML MML
rca00562 Inositol phosphate metabolism SBML MML
rca00564 Glycerophospholipid metabolism SBML MML
rca00590 Arachidonic acid metabolism SBML MML
rca00592 alpha-Linolenic acid metabolism SBML MML
rca00600 Sphingolipid metabolism SBML MML
rca00620 Pyruvate metabolism SBML MML
rca00622 Toluene and xylene degradation SBML MML
rca00624 1- and 2-Methylnaphthalene degradation SBML MML
rca00626 Naphthalene and anthracene degradation SBML MML
rca00627 1,4-Dichlorobenzene degradation SBML MML
rca00628 Fluorene degradation SBML MML
rca00629 Carbazole degradation SBML MML
rca00630 Glyoxylate and dicarboxylate metabolism SBML MML
rca00631 1,2-Dichloroethane degradation SBML MML
rca00632 (Undocumented) SBML MML
rca00640 Propanoate metabolism SBML MML
rca00641 3-Chloroacrylic acid degradation SBML MML
rca00642 Ethylbenzene degradation SBML MML
rca00643 Styrene degradation SBML MML
rca00650 Butanoate metabolism SBML MML
rca00660 C5-Branched dibasic acid metabolism SBML MML
rca00670 One carbon pool by folate SBML MML
rca00680 Methane metabolism SBML MML
rca00710 (Undocumented) SBML MML
rca00720 (Undocumented) SBML MML
rca00730 Thiamine metabolism SBML MML
rca00740 Riboflavin metabolism SBML MML
rca00750 Vitamin B6 metabolism SBML MML
rca00760 Nicotinate and nicotinamide metabolism SBML MML
rca00770 Pantothenate and CoA biosynthesis SBML MML
rca00780 Biotin metabolism SBML MML
rca00790 Folate biosynthesis SBML MML
rca00860 Porphyrin and chlorophyll metabolism SBML MML
rca00900 Terpenoid backbone biosynthesis SBML MML
rca00903 (Undocumented) SBML MML
rca00906 Carotenoid biosynthesis SBML MML
rca00910 Nitrogen metabolism SBML MML
rca00920 Sulfur metabolism SBML MML
rca00930 Caprolactam degradation SBML MML
rca00940 (Undocumented) SBML MML
rca00960 (Undocumented) SBML MML
rca00970 Aminoacyl-tRNA biosynthesis SBML MML
rca00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
rca00982 (Undocumented) SBML MML
rca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.