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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pth: Pelotomaculum thermopropionicum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pth00010 Glycolysis / Gluconeogenesis SBML MML
pth00020 Citrate cycle (TCA cycle) SBML MML
pth00030 Pentose phosphate pathway SBML MML
pth00040 Pentose and glucuronate interconversions SBML MML
pth00051 Fructose and mannose metabolism SBML MML
pth00052 Galactose metabolism SBML MML
pth00061 Fatty acid biosynthesis SBML MML
pth00071 Fatty acid metabolism SBML MML
pth00100 (Undocumented) SBML MML
pth00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pth00220 (Undocumented) SBML MML
pth00230 Purine metabolism SBML MML
pth00240 Pyrimidine metabolism SBML MML
pth00251 (Undocumented) SBML MML
pth00252 (Undocumented) SBML MML
pth00260 Glycine, serine and threonine metabolism SBML MML
pth00271 (Undocumented) SBML MML
pth00272 (Undocumented) SBML MML
pth00280 Valine, leucine and isoleucine degradation SBML MML
pth00290 Valine, leucine and isoleucine biosynthesis SBML MML
pth00300 Lysine biosynthesis SBML MML
pth00310 Lysine degradation SBML MML
pth00330 Arginine and proline metabolism SBML MML
pth00340 Histidine metabolism SBML MML
pth00350 Tyrosine metabolism SBML MML
pth00360 Phenylalanine metabolism SBML MML
pth00362 (Undocumented) SBML MML
pth00380 Tryptophan metabolism SBML MML
pth00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pth00401 Novobiocin biosynthesis SBML MML
pth00410 beta-Alanine metabolism SBML MML
pth00450 Selenoamino acid metabolism SBML MML
pth00460 (Undocumented) SBML MML
pth00471 D-Glutamine and D-glutamate metabolism SBML MML
pth00473 D-Alanine metabolism SBML MML
pth00500 Starch and sucrose metabolism SBML MML
pth00520 Amino sugar and nucleotide sugar metabolism SBML MML
pth00521 Streptomycin biosynthesis SBML MML
pth00523 Polyketide sugar unit biosynthesis SBML MML
pth00530 (Undocumented) SBML MML
pth00550 Peptidoglycan biosynthesis SBML MML
pth00561 Glycerolipid metabolism SBML MML
pth00564 Glycerophospholipid metabolism SBML MML
pth00565 Ether lipid metabolism SBML MML
pth00620 Pyruvate metabolism SBML MML
pth00624 1- and 2-Methylnaphthalene degradation SBML MML
pth00628 Fluorene degradation SBML MML
pth00630 Glyoxylate and dicarboxylate metabolism SBML MML
pth00632 (Undocumented) SBML MML
pth00640 Propanoate metabolism SBML MML
pth00641 3-Chloroacrylic acid degradation SBML MML
pth00650 Butanoate metabolism SBML MML
pth00660 C5-Branched dibasic acid metabolism SBML MML
pth00670 One carbon pool by folate SBML MML
pth00680 Methane metabolism SBML MML
pth00710 (Undocumented) SBML MML
pth00720 (Undocumented) SBML MML
pth00730 Thiamine metabolism SBML MML
pth00740 Riboflavin metabolism SBML MML
pth00750 Vitamin B6 metabolism SBML MML
pth00760 Nicotinate and nicotinamide metabolism SBML MML
pth00770 Pantothenate and CoA biosynthesis SBML MML
pth00780 Biotin metabolism SBML MML
pth00790 Folate biosynthesis SBML MML
pth00860 Porphyrin and chlorophyll metabolism SBML MML
pth00900 Terpenoid backbone biosynthesis SBML MML
pth00903 (Undocumented) SBML MML
pth00910 Nitrogen metabolism SBML MML
pth00920 Sulfur metabolism SBML MML
pth00930 Caprolactam degradation SBML MML
pth00970 Aminoacyl-tRNA biosynthesis SBML MML
pth00982 (Undocumented) SBML MML
pth00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.