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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism psa: Pseudomonas stutzeri

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
psa00010 Glycolysis / Gluconeogenesis SBML MML
psa00020 Citrate cycle (TCA cycle) SBML MML
psa00030 Pentose phosphate pathway SBML MML
psa00031 (Undocumented) SBML MML
psa00040 Pentose and glucuronate interconversions SBML MML
psa00051 Fructose and mannose metabolism SBML MML
psa00052 Galactose metabolism SBML MML
psa00053 Ascorbate and aldarate metabolism SBML MML
psa00061 Fatty acid biosynthesis SBML MML
psa00062 Fatty acid elongation in mitochondria SBML MML
psa00071 Fatty acid metabolism SBML MML
psa00072 Synthesis and degradation of ketone bodies SBML MML
psa00100 (Undocumented) SBML MML
psa00120 (Undocumented) SBML MML
psa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
psa00150 Androgen and estrogen metabolism SBML MML
psa00220 (Undocumented) SBML MML
psa00230 Purine metabolism SBML MML
psa00240 Pyrimidine metabolism SBML MML
psa00251 (Undocumented) SBML MML
psa00252 (Undocumented) SBML MML
psa00260 Glycine, serine and threonine metabolism SBML MML
psa00271 (Undocumented) SBML MML
psa00272 (Undocumented) SBML MML
psa00280 Valine, leucine and isoleucine degradation SBML MML
psa00281 Geraniol degradation SBML MML
psa00290 Valine, leucine and isoleucine biosynthesis SBML MML
psa00300 Lysine biosynthesis SBML MML
psa00310 Lysine degradation SBML MML
psa00330 Arginine and proline metabolism SBML MML
psa00340 Histidine metabolism SBML MML
psa00350 Tyrosine metabolism SBML MML
psa00360 Phenylalanine metabolism SBML MML
psa00361 gamma-Hexachlorocyclohexane degradation SBML MML
psa00362 (Undocumented) SBML MML
psa00363 Bisphenol A degradation SBML MML
psa00364 Fluorobenzoate degradation SBML MML
psa00380 Tryptophan metabolism SBML MML
psa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
psa00401 Novobiocin biosynthesis SBML MML
psa00410 beta-Alanine metabolism SBML MML
psa00430 Taurine and hypotaurine metabolism SBML MML
psa00450 Selenoamino acid metabolism SBML MML
psa00460 (Undocumented) SBML MML
psa00471 D-Glutamine and D-glutamate metabolism SBML MML
psa00473 D-Alanine metabolism SBML MML
psa00480 Glutathione metabolism SBML MML
psa00500 Starch and sucrose metabolism SBML MML
psa00520 Amino sugar and nucleotide sugar metabolism SBML MML
psa00521 Streptomycin biosynthesis SBML MML
psa00523 Polyketide sugar unit biosynthesis SBML MML
psa00530 (Undocumented) SBML MML
psa00540 Lipopolysaccharide biosynthesis SBML MML
psa00550 Peptidoglycan biosynthesis SBML MML
psa00561 Glycerolipid metabolism SBML MML
psa00562 Inositol phosphate metabolism SBML MML
psa00564 Glycerophospholipid metabolism SBML MML
psa00590 Arachidonic acid metabolism SBML MML
psa00592 alpha-Linolenic acid metabolism SBML MML
psa00620 Pyruvate metabolism SBML MML
psa00622 Toluene and xylene degradation SBML MML
psa00623 2,4-Dichlorobenzoate degradation SBML MML
psa00624 1- and 2-Methylnaphthalene degradation SBML MML
psa00625 (Undocumented) SBML MML
psa00627 1,4-Dichlorobenzene degradation SBML MML
psa00630 Glyoxylate and dicarboxylate metabolism SBML MML
psa00631 1,2-Dichloroethane degradation SBML MML
psa00632 (Undocumented) SBML MML
psa00640 Propanoate metabolism SBML MML
psa00641 3-Chloroacrylic acid degradation SBML MML
psa00643 Styrene degradation SBML MML
psa00650 Butanoate metabolism SBML MML
psa00660 C5-Branched dibasic acid metabolism SBML MML
psa00670 One carbon pool by folate SBML MML
psa00680 Methane metabolism SBML MML
psa00710 (Undocumented) SBML MML
psa00720 (Undocumented) SBML MML
psa00730 Thiamine metabolism SBML MML
psa00740 Riboflavin metabolism SBML MML
psa00750 Vitamin B6 metabolism SBML MML
psa00760 Nicotinate and nicotinamide metabolism SBML MML
psa00770 Pantothenate and CoA biosynthesis SBML MML
psa00780 Biotin metabolism SBML MML
psa00790 Folate biosynthesis SBML MML
psa00791 Atrazine degradation SBML MML
psa00860 Porphyrin and chlorophyll metabolism SBML MML
psa00900 Terpenoid backbone biosynthesis SBML MML
psa00903 (Undocumented) SBML MML
psa00906 Carotenoid biosynthesis SBML MML
psa00910 Nitrogen metabolism SBML MML
psa00920 Sulfur metabolism SBML MML
psa00930 Caprolactam degradation SBML MML
psa00940 (Undocumented) SBML MML
psa00950 (Undocumented) SBML MML
psa00960 (Undocumented) SBML MML
psa00970 Aminoacyl-tRNA biosynthesis SBML MML
psa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
psa00982 (Undocumented) SBML MML
psa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.