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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ppp: Physcomitrella patens subsp. patens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ppp00010 Glycolysis / Gluconeogenesis SBML MML
ppp00020 Citrate cycle (TCA cycle) SBML MML
ppp00030 Pentose phosphate pathway SBML MML
ppp00031 (Undocumented) SBML MML
ppp00040 Pentose and glucuronate interconversions SBML MML
ppp00051 Fructose and mannose metabolism SBML MML
ppp00052 Galactose metabolism SBML MML
ppp00053 Ascorbate and aldarate metabolism SBML MML
ppp00061 Fatty acid biosynthesis SBML MML
ppp00062 Fatty acid elongation in mitochondria SBML MML
ppp00071 Fatty acid metabolism SBML MML
ppp00072 Synthesis and degradation of ketone bodies SBML MML
ppp00100 (Undocumented) SBML MML
ppp00120 (Undocumented) SBML MML
ppp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ppp00140 (Undocumented) SBML MML
ppp00150 Androgen and estrogen metabolism SBML MML
ppp00220 (Undocumented) SBML MML
ppp00230 Purine metabolism SBML MML
ppp00232 Caffeine metabolism SBML MML
ppp00240 Pyrimidine metabolism SBML MML
ppp00251 (Undocumented) SBML MML
ppp00252 (Undocumented) SBML MML
ppp00260 Glycine, serine and threonine metabolism SBML MML
ppp00271 (Undocumented) SBML MML
ppp00272 (Undocumented) SBML MML
ppp00280 Valine, leucine and isoleucine degradation SBML MML
ppp00281 Geraniol degradation SBML MML
ppp00290 Valine, leucine and isoleucine biosynthesis SBML MML
ppp00300 Lysine biosynthesis SBML MML
ppp00310 Lysine degradation SBML MML
ppp00330 Arginine and proline metabolism SBML MML
ppp00340 Histidine metabolism SBML MML
ppp00350 Tyrosine metabolism SBML MML
ppp00360 Phenylalanine metabolism SBML MML
ppp00361 gamma-Hexachlorocyclohexane degradation SBML MML
ppp00362 (Undocumented) SBML MML
ppp00363 Bisphenol A degradation SBML MML
ppp00380 Tryptophan metabolism SBML MML
ppp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ppp00401 Novobiocin biosynthesis SBML MML
ppp00410 beta-Alanine metabolism SBML MML
ppp00430 Taurine and hypotaurine metabolism SBML MML
ppp00440 Phosphonate and phosphinate metabolism SBML MML
ppp00450 Selenoamino acid metabolism SBML MML
ppp00460 (Undocumented) SBML MML
ppp00471 D-Glutamine and D-glutamate metabolism SBML MML
ppp00480 Glutathione metabolism SBML MML
ppp00500 Starch and sucrose metabolism SBML MML
ppp00510 (Undocumented) SBML MML
ppp00520 Amino sugar and nucleotide sugar metabolism SBML MML
ppp00521 Streptomycin biosynthesis SBML MML
ppp00530 (Undocumented) SBML MML
ppp00540 Lipopolysaccharide biosynthesis SBML MML
ppp00550 Peptidoglycan biosynthesis SBML MML
ppp00561 Glycerolipid metabolism SBML MML
ppp00562 Inositol phosphate metabolism SBML MML
ppp00564 Glycerophospholipid metabolism SBML MML
ppp00565 Ether lipid metabolism SBML MML
ppp00590 Arachidonic acid metabolism SBML MML
ppp00591 Linoleic acid metabolism SBML MML
ppp00592 alpha-Linolenic acid metabolism SBML MML
ppp00600 Sphingolipid metabolism SBML MML
ppp00620 Pyruvate metabolism SBML MML
ppp00624 1- and 2-Methylnaphthalene degradation SBML MML
ppp00625 (Undocumented) SBML MML
ppp00626 Naphthalene and anthracene degradation SBML MML
ppp00628 Fluorene degradation SBML MML
ppp00630 Glyoxylate and dicarboxylate metabolism SBML MML
ppp00632 (Undocumented) SBML MML
ppp00640 Propanoate metabolism SBML MML
ppp00641 3-Chloroacrylic acid degradation SBML MML
ppp00642 Ethylbenzene degradation SBML MML
ppp00643 Styrene degradation SBML MML
ppp00650 Butanoate metabolism SBML MML
ppp00660 C5-Branched dibasic acid metabolism SBML MML
ppp00670 One carbon pool by folate SBML MML
ppp00680 Methane metabolism SBML MML
ppp00710 (Undocumented) SBML MML
ppp00720 (Undocumented) SBML MML
ppp00730 Thiamine metabolism SBML MML
ppp00740 Riboflavin metabolism SBML MML
ppp00750 Vitamin B6 metabolism SBML MML
ppp00760 Nicotinate and nicotinamide metabolism SBML MML
ppp00770 Pantothenate and CoA biosynthesis SBML MML
ppp00780 Biotin metabolism SBML MML
ppp00790 Folate biosynthesis SBML MML
ppp00830 Retinol metabolism SBML MML
ppp00860 Porphyrin and chlorophyll metabolism SBML MML
ppp00900 Terpenoid backbone biosynthesis SBML MML
ppp00903 (Undocumented) SBML MML
ppp00904 (Undocumented) SBML MML
ppp00906 Carotenoid biosynthesis SBML MML
ppp00908 (Undocumented) SBML MML
ppp00910 Nitrogen metabolism SBML MML
ppp00920 Sulfur metabolism SBML MML
ppp00930 Caprolactam degradation SBML MML
ppp00940 (Undocumented) SBML MML
ppp00941 (Undocumented) SBML MML
ppp00944 (Undocumented) SBML MML
ppp00950 (Undocumented) SBML MML
ppp00960 (Undocumented) SBML MML
ppp00970 Aminoacyl-tRNA biosynthesis SBML MML
ppp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ppp00982 (Undocumented) SBML MML
ppp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.