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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ppe: Pediococcus pentosaceus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ppe00010 Glycolysis / Gluconeogenesis SBML MML
ppe00020 Citrate cycle (TCA cycle) SBML MML
ppe00030 Pentose phosphate pathway SBML MML
ppe00051 Fructose and mannose metabolism SBML MML
ppe00052 Galactose metabolism SBML MML
ppe00061 Fatty acid biosynthesis SBML MML
ppe00100 (Undocumented) SBML MML
ppe00220 (Undocumented) SBML MML
ppe00230 Purine metabolism SBML MML
ppe00240 Pyrimidine metabolism SBML MML
ppe00251 (Undocumented) SBML MML
ppe00252 (Undocumented) SBML MML
ppe00260 Glycine, serine and threonine metabolism SBML MML
ppe00271 (Undocumented) SBML MML
ppe00272 (Undocumented) SBML MML
ppe00290 Valine, leucine and isoleucine biosynthesis SBML MML
ppe00300 Lysine biosynthesis SBML MML
ppe00330 Arginine and proline metabolism SBML MML
ppe00340 Histidine metabolism SBML MML
ppe00380 Tryptophan metabolism SBML MML
ppe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ppe00430 Taurine and hypotaurine metabolism SBML MML
ppe00450 Selenoamino acid metabolism SBML MML
ppe00460 (Undocumented) SBML MML
ppe00471 D-Glutamine and D-glutamate metabolism SBML MML
ppe00473 D-Alanine metabolism SBML MML
ppe00480 Glutathione metabolism SBML MML
ppe00500 Starch and sucrose metabolism SBML MML
ppe00520 Amino sugar and nucleotide sugar metabolism SBML MML
ppe00530 (Undocumented) SBML MML
ppe00550 Peptidoglycan biosynthesis SBML MML
ppe00561 Glycerolipid metabolism SBML MML
ppe00564 Glycerophospholipid metabolism SBML MML
ppe00600 Sphingolipid metabolism SBML MML
ppe00620 Pyruvate metabolism SBML MML
ppe00630 Glyoxylate and dicarboxylate metabolism SBML MML
ppe00640 Propanoate metabolism SBML MML
ppe00650 Butanoate metabolism SBML MML
ppe00670 One carbon pool by folate SBML MML
ppe00710 (Undocumented) SBML MML
ppe00730 Thiamine metabolism SBML MML
ppe00740 Riboflavin metabolism SBML MML
ppe00760 Nicotinate and nicotinamide metabolism SBML MML
ppe00770 Pantothenate and CoA biosynthesis SBML MML
ppe00785 Lipoic acid metabolism SBML MML
ppe00790 Folate biosynthesis SBML MML
ppe00910 Nitrogen metabolism SBML MML
ppe00970 Aminoacyl-tRNA biosynthesis SBML MML
ppe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.