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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pol: Polaromonas sp. JS666

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pol00010 Glycolysis / Gluconeogenesis SBML MML
pol00020 Citrate cycle (TCA cycle) SBML MML
pol00030 Pentose phosphate pathway SBML MML
pol00031 (Undocumented) SBML MML
pol00040 Pentose and glucuronate interconversions SBML MML
pol00051 Fructose and mannose metabolism SBML MML
pol00052 Galactose metabolism SBML MML
pol00053 Ascorbate and aldarate metabolism SBML MML
pol00061 Fatty acid biosynthesis SBML MML
pol00062 Fatty acid elongation in mitochondria SBML MML
pol00071 Fatty acid metabolism SBML MML
pol00072 Synthesis and degradation of ketone bodies SBML MML
pol00100 (Undocumented) SBML MML
pol00120 (Undocumented) SBML MML
pol00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pol00140 (Undocumented) SBML MML
pol00150 Androgen and estrogen metabolism SBML MML
pol00220 (Undocumented) SBML MML
pol00230 Purine metabolism SBML MML
pol00240 Pyrimidine metabolism SBML MML
pol00251 (Undocumented) SBML MML
pol00252 (Undocumented) SBML MML
pol00260 Glycine, serine and threonine metabolism SBML MML
pol00271 (Undocumented) SBML MML
pol00272 (Undocumented) SBML MML
pol00280 Valine, leucine and isoleucine degradation SBML MML
pol00281 Geraniol degradation SBML MML
pol00290 Valine, leucine and isoleucine biosynthesis SBML MML
pol00300 Lysine biosynthesis SBML MML
pol00310 Lysine degradation SBML MML
pol00311 Penicillin and cephalosporin biosynthesis SBML MML
pol00330 Arginine and proline metabolism SBML MML
pol00340 Histidine metabolism SBML MML
pol00350 Tyrosine metabolism SBML MML
pol00360 Phenylalanine metabolism SBML MML
pol00361 gamma-Hexachlorocyclohexane degradation SBML MML
pol00362 (Undocumented) SBML MML
pol00363 Bisphenol A degradation SBML MML
pol00364 Fluorobenzoate degradation SBML MML
pol00380 Tryptophan metabolism SBML MML
pol00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pol00401 Novobiocin biosynthesis SBML MML
pol00410 beta-Alanine metabolism SBML MML
pol00430 Taurine and hypotaurine metabolism SBML MML
pol00450 Selenoamino acid metabolism SBML MML
pol00460 (Undocumented) SBML MML
pol00471 D-Glutamine and D-glutamate metabolism SBML MML
pol00472 D-Arginine and D-ornithine metabolism SBML MML
pol00473 D-Alanine metabolism SBML MML
pol00480 Glutathione metabolism SBML MML
pol00500 Starch and sucrose metabolism SBML MML
pol00520 Amino sugar and nucleotide sugar metabolism SBML MML
pol00521 Streptomycin biosynthesis SBML MML
pol00523 Polyketide sugar unit biosynthesis SBML MML
pol00530 (Undocumented) SBML MML
pol00540 Lipopolysaccharide biosynthesis SBML MML
pol00550 Peptidoglycan biosynthesis SBML MML
pol00561 Glycerolipid metabolism SBML MML
pol00562 Inositol phosphate metabolism SBML MML
pol00564 Glycerophospholipid metabolism SBML MML
pol00565 Ether lipid metabolism SBML MML
pol00590 Arachidonic acid metabolism SBML MML
pol00592 alpha-Linolenic acid metabolism SBML MML
pol00620 Pyruvate metabolism SBML MML
pol00622 Toluene and xylene degradation SBML MML
pol00623 2,4-Dichlorobenzoate degradation SBML MML
pol00624 1- and 2-Methylnaphthalene degradation SBML MML
pol00626 Naphthalene and anthracene degradation SBML MML
pol00627 1,4-Dichlorobenzene degradation SBML MML
pol00628 Fluorene degradation SBML MML
pol00629 Carbazole degradation SBML MML
pol00630 Glyoxylate and dicarboxylate metabolism SBML MML
pol00631 1,2-Dichloroethane degradation SBML MML
pol00632 (Undocumented) SBML MML
pol00640 Propanoate metabolism SBML MML
pol00641 3-Chloroacrylic acid degradation SBML MML
pol00642 Ethylbenzene degradation SBML MML
pol00643 Styrene degradation SBML MML
pol00650 Butanoate metabolism SBML MML
pol00660 C5-Branched dibasic acid metabolism SBML MML
pol00670 One carbon pool by folate SBML MML
pol00680 Methane metabolism SBML MML
pol00710 (Undocumented) SBML MML
pol00720 (Undocumented) SBML MML
pol00730 Thiamine metabolism SBML MML
pol00740 Riboflavin metabolism SBML MML
pol00750 Vitamin B6 metabolism SBML MML
pol00760 Nicotinate and nicotinamide metabolism SBML MML
pol00770 Pantothenate and CoA biosynthesis SBML MML
pol00780 Biotin metabolism SBML MML
pol00785 Lipoic acid metabolism SBML MML
pol00790 Folate biosynthesis SBML MML
pol00860 Porphyrin and chlorophyll metabolism SBML MML
pol00900 Terpenoid backbone biosynthesis SBML MML
pol00903 (Undocumented) SBML MML
pol00910 Nitrogen metabolism SBML MML
pol00920 Sulfur metabolism SBML MML
pol00930 Caprolactam degradation SBML MML
pol00940 (Undocumented) SBML MML
pol00950 (Undocumented) SBML MML
pol00960 (Undocumented) SBML MML
pol00970 Aminoacyl-tRNA biosynthesis SBML MML
pol00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pol00982 (Undocumented) SBML MML
pol00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.