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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pnu: Polynucleobacter sp. QLW-P1DMWA-1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pnu00010 Glycolysis / Gluconeogenesis SBML MML
pnu00020 Citrate cycle (TCA cycle) SBML MML
pnu00030 Pentose phosphate pathway SBML MML
pnu00031 (Undocumented) SBML MML
pnu00040 Pentose and glucuronate interconversions SBML MML
pnu00051 Fructose and mannose metabolism SBML MML
pnu00052 Galactose metabolism SBML MML
pnu00053 Ascorbate and aldarate metabolism SBML MML
pnu00061 Fatty acid biosynthesis SBML MML
pnu00062 Fatty acid elongation in mitochondria SBML MML
pnu00071 Fatty acid metabolism SBML MML
pnu00072 Synthesis and degradation of ketone bodies SBML MML
pnu00100 (Undocumented) SBML MML
pnu00120 (Undocumented) SBML MML
pnu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pnu00150 Androgen and estrogen metabolism SBML MML
pnu00220 (Undocumented) SBML MML
pnu00230 Purine metabolism SBML MML
pnu00240 Pyrimidine metabolism SBML MML
pnu00251 (Undocumented) SBML MML
pnu00252 (Undocumented) SBML MML
pnu00260 Glycine, serine and threonine metabolism SBML MML
pnu00271 (Undocumented) SBML MML
pnu00272 (Undocumented) SBML MML
pnu00280 Valine, leucine and isoleucine degradation SBML MML
pnu00281 Geraniol degradation SBML MML
pnu00290 Valine, leucine and isoleucine biosynthesis SBML MML
pnu00300 Lysine biosynthesis SBML MML
pnu00310 Lysine degradation SBML MML
pnu00311 Penicillin and cephalosporin biosynthesis SBML MML
pnu00330 Arginine and proline metabolism SBML MML
pnu00340 Histidine metabolism SBML MML
pnu00350 Tyrosine metabolism SBML MML
pnu00360 Phenylalanine metabolism SBML MML
pnu00361 gamma-Hexachlorocyclohexane degradation SBML MML
pnu00362 (Undocumented) SBML MML
pnu00363 Bisphenol A degradation SBML MML
pnu00364 Fluorobenzoate degradation SBML MML
pnu00380 Tryptophan metabolism SBML MML
pnu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pnu00401 Novobiocin biosynthesis SBML MML
pnu00410 beta-Alanine metabolism SBML MML
pnu00430 Taurine and hypotaurine metabolism SBML MML
pnu00450 Selenoamino acid metabolism SBML MML
pnu00460 (Undocumented) SBML MML
pnu00471 D-Glutamine and D-glutamate metabolism SBML MML
pnu00473 D-Alanine metabolism SBML MML
pnu00480 Glutathione metabolism SBML MML
pnu00500 Starch and sucrose metabolism SBML MML
pnu00520 Amino sugar and nucleotide sugar metabolism SBML MML
pnu00521 Streptomycin biosynthesis SBML MML
pnu00523 Polyketide sugar unit biosynthesis SBML MML
pnu00530 (Undocumented) SBML MML
pnu00540 Lipopolysaccharide biosynthesis SBML MML
pnu00550 Peptidoglycan biosynthesis SBML MML
pnu00561 Glycerolipid metabolism SBML MML
pnu00562 Inositol phosphate metabolism SBML MML
pnu00564 Glycerophospholipid metabolism SBML MML
pnu00590 Arachidonic acid metabolism SBML MML
pnu00620 Pyruvate metabolism SBML MML
pnu00622 Toluene and xylene degradation SBML MML
pnu00624 1- and 2-Methylnaphthalene degradation SBML MML
pnu00626 Naphthalene and anthracene degradation SBML MML
pnu00627 1,4-Dichlorobenzene degradation SBML MML
pnu00630 Glyoxylate and dicarboxylate metabolism SBML MML
pnu00631 1,2-Dichloroethane degradation SBML MML
pnu00632 (Undocumented) SBML MML
pnu00633 Trinitrotoluene degradation SBML MML
pnu00640 Propanoate metabolism SBML MML
pnu00641 3-Chloroacrylic acid degradation SBML MML
pnu00643 Styrene degradation SBML MML
pnu00650 Butanoate metabolism SBML MML
pnu00660 C5-Branched dibasic acid metabolism SBML MML
pnu00670 One carbon pool by folate SBML MML
pnu00680 Methane metabolism SBML MML
pnu00710 (Undocumented) SBML MML
pnu00720 (Undocumented) SBML MML
pnu00730 Thiamine metabolism SBML MML
pnu00740 Riboflavin metabolism SBML MML
pnu00750 Vitamin B6 metabolism SBML MML
pnu00760 Nicotinate and nicotinamide metabolism SBML MML
pnu00770 Pantothenate and CoA biosynthesis SBML MML
pnu00780 Biotin metabolism SBML MML
pnu00785 Lipoic acid metabolism SBML MML
pnu00790 Folate biosynthesis SBML MML
pnu00860 Porphyrin and chlorophyll metabolism SBML MML
pnu00900 Terpenoid backbone biosynthesis SBML MML
pnu00903 (Undocumented) SBML MML
pnu00910 Nitrogen metabolism SBML MML
pnu00920 Sulfur metabolism SBML MML
pnu00930 Caprolactam degradation SBML MML
pnu00940 (Undocumented) SBML MML
pnu00950 (Undocumented) SBML MML
pnu00960 (Undocumented) SBML MML
pnu00970 Aminoacyl-tRNA biosynthesis SBML MML
pnu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pnu00982 (Undocumented) SBML MML
pnu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.