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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pna: Polaromonas naphthalenivorans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pna00010 Glycolysis / Gluconeogenesis SBML MML
pna00020 Citrate cycle (TCA cycle) SBML MML
pna00030 Pentose phosphate pathway SBML MML
pna00031 (Undocumented) SBML MML
pna00040 Pentose and glucuronate interconversions SBML MML
pna00051 Fructose and mannose metabolism SBML MML
pna00052 Galactose metabolism SBML MML
pna00053 Ascorbate and aldarate metabolism SBML MML
pna00061 Fatty acid biosynthesis SBML MML
pna00062 Fatty acid elongation in mitochondria SBML MML
pna00071 Fatty acid metabolism SBML MML
pna00072 Synthesis and degradation of ketone bodies SBML MML
pna00100 (Undocumented) SBML MML
pna00120 (Undocumented) SBML MML
pna00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pna00220 (Undocumented) SBML MML
pna00230 Purine metabolism SBML MML
pna00240 Pyrimidine metabolism SBML MML
pna00251 (Undocumented) SBML MML
pna00252 (Undocumented) SBML MML
pna00260 Glycine, serine and threonine metabolism SBML MML
pna00271 (Undocumented) SBML MML
pna00272 (Undocumented) SBML MML
pna00280 Valine, leucine and isoleucine degradation SBML MML
pna00281 Geraniol degradation SBML MML
pna00290 Valine, leucine and isoleucine biosynthesis SBML MML
pna00300 Lysine biosynthesis SBML MML
pna00310 Lysine degradation SBML MML
pna00330 Arginine and proline metabolism SBML MML
pna00340 Histidine metabolism SBML MML
pna00350 Tyrosine metabolism SBML MML
pna00360 Phenylalanine metabolism SBML MML
pna00361 gamma-Hexachlorocyclohexane degradation SBML MML
pna00362 (Undocumented) SBML MML
pna00363 Bisphenol A degradation SBML MML
pna00364 Fluorobenzoate degradation SBML MML
pna00380 Tryptophan metabolism SBML MML
pna00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pna00401 Novobiocin biosynthesis SBML MML
pna00410 beta-Alanine metabolism SBML MML
pna00430 Taurine and hypotaurine metabolism SBML MML
pna00450 Selenoamino acid metabolism SBML MML
pna00460 (Undocumented) SBML MML
pna00471 D-Glutamine and D-glutamate metabolism SBML MML
pna00472 D-Arginine and D-ornithine metabolism SBML MML
pna00473 D-Alanine metabolism SBML MML
pna00480 Glutathione metabolism SBML MML
pna00500 Starch and sucrose metabolism SBML MML
pna00520 Amino sugar and nucleotide sugar metabolism SBML MML
pna00521 Streptomycin biosynthesis SBML MML
pna00523 Polyketide sugar unit biosynthesis SBML MML
pna00530 (Undocumented) SBML MML
pna00540 Lipopolysaccharide biosynthesis SBML MML
pna00550 Peptidoglycan biosynthesis SBML MML
pna00561 Glycerolipid metabolism SBML MML
pna00562 Inositol phosphate metabolism SBML MML
pna00564 Glycerophospholipid metabolism SBML MML
pna00590 Arachidonic acid metabolism SBML MML
pna00592 alpha-Linolenic acid metabolism SBML MML
pna00620 Pyruvate metabolism SBML MML
pna00621 (Undocumented) SBML MML
pna00622 Toluene and xylene degradation SBML MML
pna00623 2,4-Dichlorobenzoate degradation SBML MML
pna00624 1- and 2-Methylnaphthalene degradation SBML MML
pna00625 (Undocumented) SBML MML
pna00626 Naphthalene and anthracene degradation SBML MML
pna00627 1,4-Dichlorobenzene degradation SBML MML
pna00628 Fluorene degradation SBML MML
pna00629 Carbazole degradation SBML MML
pna00630 Glyoxylate and dicarboxylate metabolism SBML MML
pna00631 1,2-Dichloroethane degradation SBML MML
pna00632 (Undocumented) SBML MML
pna00633 Trinitrotoluene degradation SBML MML
pna00640 Propanoate metabolism SBML MML
pna00641 3-Chloroacrylic acid degradation SBML MML
pna00642 Ethylbenzene degradation SBML MML
pna00643 Styrene degradation SBML MML
pna00650 Butanoate metabolism SBML MML
pna00660 C5-Branched dibasic acid metabolism SBML MML
pna00670 One carbon pool by folate SBML MML
pna00680 Methane metabolism SBML MML
pna00710 (Undocumented) SBML MML
pna00720 (Undocumented) SBML MML
pna00730 Thiamine metabolism SBML MML
pna00740 Riboflavin metabolism SBML MML
pna00750 Vitamin B6 metabolism SBML MML
pna00760 Nicotinate and nicotinamide metabolism SBML MML
pna00770 Pantothenate and CoA biosynthesis SBML MML
pna00780 Biotin metabolism SBML MML
pna00785 Lipoic acid metabolism SBML MML
pna00790 Folate biosynthesis SBML MML
pna00791 Atrazine degradation SBML MML
pna00860 Porphyrin and chlorophyll metabolism SBML MML
pna00900 Terpenoid backbone biosynthesis SBML MML
pna00903 (Undocumented) SBML MML
pna00910 Nitrogen metabolism SBML MML
pna00920 Sulfur metabolism SBML MML
pna00930 Caprolactam degradation SBML MML
pna00950 (Undocumented) SBML MML
pna00970 Aminoacyl-tRNA biosynthesis SBML MML
pna00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pna00982 (Undocumented) SBML MML
pna00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.