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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmm: Prochlorococcus marinus MED4

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmm00010 Glycolysis / Gluconeogenesis SBML MML
pmm00020 Citrate cycle (TCA cycle) SBML MML
pmm00030 Pentose phosphate pathway SBML MML
pmm00040 Pentose and glucuronate interconversions SBML MML
pmm00051 Fructose and mannose metabolism SBML MML
pmm00052 Galactose metabolism SBML MML
pmm00053 Ascorbate and aldarate metabolism SBML MML
pmm00061 Fatty acid biosynthesis SBML MML
pmm00071 Fatty acid metabolism SBML MML
pmm00100 (Undocumented) SBML MML
pmm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmm00150 Androgen and estrogen metabolism SBML MML
pmm00220 (Undocumented) SBML MML
pmm00230 Purine metabolism SBML MML
pmm00240 Pyrimidine metabolism SBML MML
pmm00251 (Undocumented) SBML MML
pmm00252 (Undocumented) SBML MML
pmm00260 Glycine, serine and threonine metabolism SBML MML
pmm00271 (Undocumented) SBML MML
pmm00272 (Undocumented) SBML MML
pmm00280 Valine, leucine and isoleucine degradation SBML MML
pmm00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmm00300 Lysine biosynthesis SBML MML
pmm00310 Lysine degradation SBML MML
pmm00330 Arginine and proline metabolism SBML MML
pmm00340 Histidine metabolism SBML MML
pmm00350 Tyrosine metabolism SBML MML
pmm00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pmm00360 Phenylalanine metabolism SBML MML
pmm00362 (Undocumented) SBML MML
pmm00380 Tryptophan metabolism SBML MML
pmm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmm00401 Novobiocin biosynthesis SBML MML
pmm00410 beta-Alanine metabolism SBML MML
pmm00450 Selenoamino acid metabolism SBML MML
pmm00471 D-Glutamine and D-glutamate metabolism SBML MML
pmm00473 D-Alanine metabolism SBML MML
pmm00480 Glutathione metabolism SBML MML
pmm00500 Starch and sucrose metabolism SBML MML
pmm00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmm00521 Streptomycin biosynthesis SBML MML
pmm00523 Polyketide sugar unit biosynthesis SBML MML
pmm00530 (Undocumented) SBML MML
pmm00540 Lipopolysaccharide biosynthesis SBML MML
pmm00550 Peptidoglycan biosynthesis SBML MML
pmm00561 Glycerolipid metabolism SBML MML
pmm00562 Inositol phosphate metabolism SBML MML
pmm00564 Glycerophospholipid metabolism SBML MML
pmm00590 Arachidonic acid metabolism SBML MML
pmm00620 Pyruvate metabolism SBML MML
pmm00626 Naphthalene and anthracene degradation SBML MML
pmm00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmm00640 Propanoate metabolism SBML MML
pmm00641 3-Chloroacrylic acid degradation SBML MML
pmm00650 Butanoate metabolism SBML MML
pmm00670 One carbon pool by folate SBML MML
pmm00710 (Undocumented) SBML MML
pmm00720 (Undocumented) SBML MML
pmm00730 Thiamine metabolism SBML MML
pmm00740 Riboflavin metabolism SBML MML
pmm00750 Vitamin B6 metabolism SBML MML
pmm00760 Nicotinate and nicotinamide metabolism SBML MML
pmm00770 Pantothenate and CoA biosynthesis SBML MML
pmm00780 Biotin metabolism SBML MML
pmm00785 Lipoic acid metabolism SBML MML
pmm00790 Folate biosynthesis SBML MML
pmm00860 Porphyrin and chlorophyll metabolism SBML MML
pmm00900 Terpenoid backbone biosynthesis SBML MML
pmm00906 Carotenoid biosynthesis SBML MML
pmm00910 Nitrogen metabolism SBML MML
pmm00920 Sulfur metabolism SBML MML
pmm00940 (Undocumented) SBML MML
pmm00941 (Undocumented) SBML MML
pmm00950 (Undocumented) SBML MML
pmm00970 Aminoacyl-tRNA biosynthesis SBML MML
pmm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.