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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pme: Prochlorococcus marinus NATL1A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pme00010 Glycolysis / Gluconeogenesis SBML MML
pme00020 Citrate cycle (TCA cycle) SBML MML
pme00030 Pentose phosphate pathway SBML MML
pme00040 Pentose and glucuronate interconversions SBML MML
pme00051 Fructose and mannose metabolism SBML MML
pme00052 Galactose metabolism SBML MML
pme00053 Ascorbate and aldarate metabolism SBML MML
pme00061 Fatty acid biosynthesis SBML MML
pme00071 Fatty acid metabolism SBML MML
pme00100 (Undocumented) SBML MML
pme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pme00220 (Undocumented) SBML MML
pme00230 Purine metabolism SBML MML
pme00240 Pyrimidine metabolism SBML MML
pme00251 (Undocumented) SBML MML
pme00252 (Undocumented) SBML MML
pme00260 Glycine, serine and threonine metabolism SBML MML
pme00271 (Undocumented) SBML MML
pme00272 (Undocumented) SBML MML
pme00280 Valine, leucine and isoleucine degradation SBML MML
pme00290 Valine, leucine and isoleucine biosynthesis SBML MML
pme00300 Lysine biosynthesis SBML MML
pme00310 Lysine degradation SBML MML
pme00311 Penicillin and cephalosporin biosynthesis SBML MML
pme00330 Arginine and proline metabolism SBML MML
pme00340 Histidine metabolism SBML MML
pme00350 Tyrosine metabolism SBML MML
pme00360 Phenylalanine metabolism SBML MML
pme00380 Tryptophan metabolism SBML MML
pme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pme00401 Novobiocin biosynthesis SBML MML
pme00410 beta-Alanine metabolism SBML MML
pme00450 Selenoamino acid metabolism SBML MML
pme00460 (Undocumented) SBML MML
pme00471 D-Glutamine and D-glutamate metabolism SBML MML
pme00472 D-Arginine and D-ornithine metabolism SBML MML
pme00473 D-Alanine metabolism SBML MML
pme00480 Glutathione metabolism SBML MML
pme00500 Starch and sucrose metabolism SBML MML
pme00520 Amino sugar and nucleotide sugar metabolism SBML MML
pme00521 Streptomycin biosynthesis SBML MML
pme00523 Polyketide sugar unit biosynthesis SBML MML
pme00530 (Undocumented) SBML MML
pme00540 Lipopolysaccharide biosynthesis SBML MML
pme00550 Peptidoglycan biosynthesis SBML MML
pme00561 Glycerolipid metabolism SBML MML
pme00562 Inositol phosphate metabolism SBML MML
pme00564 Glycerophospholipid metabolism SBML MML
pme00590 Arachidonic acid metabolism SBML MML
pme00620 Pyruvate metabolism SBML MML
pme00630 Glyoxylate and dicarboxylate metabolism SBML MML
pme00640 Propanoate metabolism SBML MML
pme00641 3-Chloroacrylic acid degradation SBML MML
pme00650 Butanoate metabolism SBML MML
pme00670 One carbon pool by folate SBML MML
pme00680 Methane metabolism SBML MML
pme00710 (Undocumented) SBML MML
pme00720 (Undocumented) SBML MML
pme00730 Thiamine metabolism SBML MML
pme00740 Riboflavin metabolism SBML MML
pme00750 Vitamin B6 metabolism SBML MML
pme00760 Nicotinate and nicotinamide metabolism SBML MML
pme00770 Pantothenate and CoA biosynthesis SBML MML
pme00780 Biotin metabolism SBML MML
pme00785 Lipoic acid metabolism SBML MML
pme00790 Folate biosynthesis SBML MML
pme00860 Porphyrin and chlorophyll metabolism SBML MML
pme00900 Terpenoid backbone biosynthesis SBML MML
pme00906 Carotenoid biosynthesis SBML MML
pme00910 Nitrogen metabolism SBML MML
pme00920 Sulfur metabolism SBML MML
pme00970 Aminoacyl-tRNA biosynthesis SBML MML
pme00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.