This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pmb: Prochlorococcus marinus AS9601

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pmb00010 Glycolysis / Gluconeogenesis SBML MML
pmb00020 Citrate cycle (TCA cycle) SBML MML
pmb00030 Pentose phosphate pathway SBML MML
pmb00040 Pentose and glucuronate interconversions SBML MML
pmb00051 Fructose and mannose metabolism SBML MML
pmb00052 Galactose metabolism SBML MML
pmb00053 Ascorbate and aldarate metabolism SBML MML
pmb00061 Fatty acid biosynthesis SBML MML
pmb00071 Fatty acid metabolism SBML MML
pmb00100 (Undocumented) SBML MML
pmb00120 (Undocumented) SBML MML
pmb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pmb00220 (Undocumented) SBML MML
pmb00230 Purine metabolism SBML MML
pmb00240 Pyrimidine metabolism SBML MML
pmb00251 (Undocumented) SBML MML
pmb00252 (Undocumented) SBML MML
pmb00260 Glycine, serine and threonine metabolism SBML MML
pmb00271 (Undocumented) SBML MML
pmb00272 (Undocumented) SBML MML
pmb00280 Valine, leucine and isoleucine degradation SBML MML
pmb00290 Valine, leucine and isoleucine biosynthesis SBML MML
pmb00300 Lysine biosynthesis SBML MML
pmb00310 Lysine degradation SBML MML
pmb00330 Arginine and proline metabolism SBML MML
pmb00340 Histidine metabolism SBML MML
pmb00350 Tyrosine metabolism SBML MML
pmb00360 Phenylalanine metabolism SBML MML
pmb00380 Tryptophan metabolism SBML MML
pmb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pmb00401 Novobiocin biosynthesis SBML MML
pmb00410 beta-Alanine metabolism SBML MML
pmb00450 Selenoamino acid metabolism SBML MML
pmb00460 (Undocumented) SBML MML
pmb00471 D-Glutamine and D-glutamate metabolism SBML MML
pmb00472 D-Arginine and D-ornithine metabolism SBML MML
pmb00473 D-Alanine metabolism SBML MML
pmb00480 Glutathione metabolism SBML MML
pmb00500 Starch and sucrose metabolism SBML MML
pmb00520 Amino sugar and nucleotide sugar metabolism SBML MML
pmb00521 Streptomycin biosynthesis SBML MML
pmb00523 Polyketide sugar unit biosynthesis SBML MML
pmb00530 (Undocumented) SBML MML
pmb00540 Lipopolysaccharide biosynthesis SBML MML
pmb00550 Peptidoglycan biosynthesis SBML MML
pmb00561 Glycerolipid metabolism SBML MML
pmb00562 Inositol phosphate metabolism SBML MML
pmb00564 Glycerophospholipid metabolism SBML MML
pmb00590 Arachidonic acid metabolism SBML MML
pmb00620 Pyruvate metabolism SBML MML
pmb00624 1- and 2-Methylnaphthalene degradation SBML MML
pmb00630 Glyoxylate and dicarboxylate metabolism SBML MML
pmb00632 (Undocumented) SBML MML
pmb00640 Propanoate metabolism SBML MML
pmb00641 3-Chloroacrylic acid degradation SBML MML
pmb00643 Styrene degradation SBML MML
pmb00650 Butanoate metabolism SBML MML
pmb00670 One carbon pool by folate SBML MML
pmb00680 Methane metabolism SBML MML
pmb00710 (Undocumented) SBML MML
pmb00720 (Undocumented) SBML MML
pmb00730 Thiamine metabolism SBML MML
pmb00740 Riboflavin metabolism SBML MML
pmb00750 Vitamin B6 metabolism SBML MML
pmb00760 Nicotinate and nicotinamide metabolism SBML MML
pmb00770 Pantothenate and CoA biosynthesis SBML MML
pmb00780 Biotin metabolism SBML MML
pmb00785 Lipoic acid metabolism SBML MML
pmb00790 Folate biosynthesis SBML MML
pmb00860 Porphyrin and chlorophyll metabolism SBML MML
pmb00900 Terpenoid backbone biosynthesis SBML MML
pmb00906 Carotenoid biosynthesis SBML MML
pmb00910 Nitrogen metabolism SBML MML
pmb00920 Sulfur metabolism SBML MML
pmb00950 (Undocumented) SBML MML
pmb00970 Aminoacyl-tRNA biosynthesis SBML MML
pmb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pmb00982 (Undocumented) SBML MML
pmb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.