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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pgn: Porphyromonas gingivalis ATCC 33277

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pgn00010 Glycolysis / Gluconeogenesis SBML MML
pgn00020 Citrate cycle (TCA cycle) SBML MML
pgn00030 Pentose phosphate pathway SBML MML
pgn00040 Pentose and glucuronate interconversions SBML MML
pgn00051 Fructose and mannose metabolism SBML MML
pgn00052 Galactose metabolism SBML MML
pgn00061 Fatty acid biosynthesis SBML MML
pgn00071 Fatty acid metabolism SBML MML
pgn00100 (Undocumented) SBML MML
pgn00120 (Undocumented) SBML MML
pgn00220 (Undocumented) SBML MML
pgn00230 Purine metabolism SBML MML
pgn00240 Pyrimidine metabolism SBML MML
pgn00251 (Undocumented) SBML MML
pgn00252 (Undocumented) SBML MML
pgn00260 Glycine, serine and threonine metabolism SBML MML
pgn00271 (Undocumented) SBML MML
pgn00272 (Undocumented) SBML MML
pgn00280 Valine, leucine and isoleucine degradation SBML MML
pgn00281 Geraniol degradation SBML MML
pgn00290 Valine, leucine and isoleucine biosynthesis SBML MML
pgn00300 Lysine biosynthesis SBML MML
pgn00310 Lysine degradation SBML MML
pgn00330 Arginine and proline metabolism SBML MML
pgn00340 Histidine metabolism SBML MML
pgn00350 Tyrosine metabolism SBML MML
pgn00360 Phenylalanine metabolism SBML MML
pgn00361 gamma-Hexachlorocyclohexane degradation SBML MML
pgn00380 Tryptophan metabolism SBML MML
pgn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pgn00410 beta-Alanine metabolism SBML MML
pgn00430 Taurine and hypotaurine metabolism SBML MML
pgn00450 Selenoamino acid metabolism SBML MML
pgn00460 (Undocumented) SBML MML
pgn00471 D-Glutamine and D-glutamate metabolism SBML MML
pgn00473 D-Alanine metabolism SBML MML
pgn00500 Starch and sucrose metabolism SBML MML
pgn00520 Amino sugar and nucleotide sugar metabolism SBML MML
pgn00521 Streptomycin biosynthesis SBML MML
pgn00523 Polyketide sugar unit biosynthesis SBML MML
pgn00530 (Undocumented) SBML MML
pgn00540 Lipopolysaccharide biosynthesis SBML MML
pgn00550 Peptidoglycan biosynthesis SBML MML
pgn00561 Glycerolipid metabolism SBML MML
pgn00564 Glycerophospholipid metabolism SBML MML
pgn00600 Sphingolipid metabolism SBML MML
pgn00620 Pyruvate metabolism SBML MML
pgn00624 1- and 2-Methylnaphthalene degradation SBML MML
pgn00626 Naphthalene and anthracene degradation SBML MML
pgn00630 Glyoxylate and dicarboxylate metabolism SBML MML
pgn00632 (Undocumented) SBML MML
pgn00640 Propanoate metabolism SBML MML
pgn00641 3-Chloroacrylic acid degradation SBML MML
pgn00650 Butanoate metabolism SBML MML
pgn00670 One carbon pool by folate SBML MML
pgn00710 (Undocumented) SBML MML
pgn00720 (Undocumented) SBML MML
pgn00730 Thiamine metabolism SBML MML
pgn00740 Riboflavin metabolism SBML MML
pgn00750 Vitamin B6 metabolism SBML MML
pgn00760 Nicotinate and nicotinamide metabolism SBML MML
pgn00770 Pantothenate and CoA biosynthesis SBML MML
pgn00780 Biotin metabolism SBML MML
pgn00790 Folate biosynthesis SBML MML
pgn00791 Atrazine degradation SBML MML
pgn00860 Porphyrin and chlorophyll metabolism SBML MML
pgn00900 Terpenoid backbone biosynthesis SBML MML
pgn00903 (Undocumented) SBML MML
pgn00910 Nitrogen metabolism SBML MML
pgn00930 Caprolactam degradation SBML MML
pgn00940 (Undocumented) SBML MML
pgn00970 Aminoacyl-tRNA biosynthesis SBML MML
pgn00982 (Undocumented) SBML MML
pgn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.