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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pgi: Porphyromonas gingivalis W83

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pgi00010 Glycolysis / Gluconeogenesis SBML MML
pgi00020 Citrate cycle (TCA cycle) SBML MML
pgi00030 Pentose phosphate pathway SBML MML
pgi00040 Pentose and glucuronate interconversions SBML MML
pgi00051 Fructose and mannose metabolism SBML MML
pgi00052 Galactose metabolism SBML MML
pgi00061 Fatty acid biosynthesis SBML MML
pgi00100 (Undocumented) SBML MML
pgi00120 (Undocumented) SBML MML
pgi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pgi00220 (Undocumented) SBML MML
pgi00230 Purine metabolism SBML MML
pgi00240 Pyrimidine metabolism SBML MML
pgi00251 (Undocumented) SBML MML
pgi00252 (Undocumented) SBML MML
pgi00260 Glycine, serine and threonine metabolism SBML MML
pgi00271 (Undocumented) SBML MML
pgi00272 (Undocumented) SBML MML
pgi00280 Valine, leucine and isoleucine degradation SBML MML
pgi00281 Geraniol degradation SBML MML
pgi00290 Valine, leucine and isoleucine biosynthesis SBML MML
pgi00300 Lysine biosynthesis SBML MML
pgi00310 Lysine degradation SBML MML
pgi00330 Arginine and proline metabolism SBML MML
pgi00340 Histidine metabolism SBML MML
pgi00350 Tyrosine metabolism SBML MML
pgi00361 gamma-Hexachlorocyclohexane degradation SBML MML
pgi00362 (Undocumented) SBML MML
pgi00380 Tryptophan metabolism SBML MML
pgi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pgi00410 beta-Alanine metabolism SBML MML
pgi00430 Taurine and hypotaurine metabolism SBML MML
pgi00450 Selenoamino acid metabolism SBML MML
pgi00460 (Undocumented) SBML MML
pgi00471 D-Glutamine and D-glutamate metabolism SBML MML
pgi00473 D-Alanine metabolism SBML MML
pgi00500 Starch and sucrose metabolism SBML MML
pgi00520 Amino sugar and nucleotide sugar metabolism SBML MML
pgi00521 Streptomycin biosynthesis SBML MML
pgi00523 Polyketide sugar unit biosynthesis SBML MML
pgi00530 (Undocumented) SBML MML
pgi00540 Lipopolysaccharide biosynthesis SBML MML
pgi00550 Peptidoglycan biosynthesis SBML MML
pgi00561 Glycerolipid metabolism SBML MML
pgi00564 Glycerophospholipid metabolism SBML MML
pgi00620 Pyruvate metabolism SBML MML
pgi00624 1- and 2-Methylnaphthalene degradation SBML MML
pgi00626 Naphthalene and anthracene degradation SBML MML
pgi00630 Glyoxylate and dicarboxylate metabolism SBML MML
pgi00632 (Undocumented) SBML MML
pgi00640 Propanoate metabolism SBML MML
pgi00650 Butanoate metabolism SBML MML
pgi00670 One carbon pool by folate SBML MML
pgi00710 (Undocumented) SBML MML
pgi00720 (Undocumented) SBML MML
pgi00730 Thiamine metabolism SBML MML
pgi00740 Riboflavin metabolism SBML MML
pgi00750 Vitamin B6 metabolism SBML MML
pgi00760 Nicotinate and nicotinamide metabolism SBML MML
pgi00770 Pantothenate and CoA biosynthesis SBML MML
pgi00780 Biotin metabolism SBML MML
pgi00785 Lipoic acid metabolism SBML MML
pgi00790 Folate biosynthesis SBML MML
pgi00860 Porphyrin and chlorophyll metabolism SBML MML
pgi00900 Terpenoid backbone biosynthesis SBML MML
pgi00903 (Undocumented) SBML MML
pgi00910 Nitrogen metabolism SBML MML
pgi00940 (Undocumented) SBML MML
pgi00970 Aminoacyl-tRNA biosynthesis SBML MML
pgi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.