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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pfo: Pseudomonas fluorescens Pf0-1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pfo00010 Glycolysis / Gluconeogenesis SBML MML
pfo00020 Citrate cycle (TCA cycle) SBML MML
pfo00030 Pentose phosphate pathway SBML MML
pfo00031 (Undocumented) SBML MML
pfo00040 Pentose and glucuronate interconversions SBML MML
pfo00051 Fructose and mannose metabolism SBML MML
pfo00052 Galactose metabolism SBML MML
pfo00053 Ascorbate and aldarate metabolism SBML MML
pfo00061 Fatty acid biosynthesis SBML MML
pfo00062 Fatty acid elongation in mitochondria SBML MML
pfo00071 Fatty acid metabolism SBML MML
pfo00072 Synthesis and degradation of ketone bodies SBML MML
pfo00100 (Undocumented) SBML MML
pfo00120 (Undocumented) SBML MML
pfo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pfo00150 Androgen and estrogen metabolism SBML MML
pfo00220 (Undocumented) SBML MML
pfo00230 Purine metabolism SBML MML
pfo00240 Pyrimidine metabolism SBML MML
pfo00251 (Undocumented) SBML MML
pfo00252 (Undocumented) SBML MML
pfo00260 Glycine, serine and threonine metabolism SBML MML
pfo00271 (Undocumented) SBML MML
pfo00272 (Undocumented) SBML MML
pfo00280 Valine, leucine and isoleucine degradation SBML MML
pfo00281 Geraniol degradation SBML MML
pfo00290 Valine, leucine and isoleucine biosynthesis SBML MML
pfo00300 Lysine biosynthesis SBML MML
pfo00310 Lysine degradation SBML MML
pfo00330 Arginine and proline metabolism SBML MML
pfo00340 Histidine metabolism SBML MML
pfo00350 Tyrosine metabolism SBML MML
pfo00360 Phenylalanine metabolism SBML MML
pfo00361 gamma-Hexachlorocyclohexane degradation SBML MML
pfo00362 (Undocumented) SBML MML
pfo00363 Bisphenol A degradation SBML MML
pfo00364 Fluorobenzoate degradation SBML MML
pfo00380 Tryptophan metabolism SBML MML
pfo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pfo00401 Novobiocin biosynthesis SBML MML
pfo00410 beta-Alanine metabolism SBML MML
pfo00430 Taurine and hypotaurine metabolism SBML MML
pfo00440 Phosphonate and phosphinate metabolism SBML MML
pfo00450 Selenoamino acid metabolism SBML MML
pfo00460 (Undocumented) SBML MML
pfo00471 D-Glutamine and D-glutamate metabolism SBML MML
pfo00473 D-Alanine metabolism SBML MML
pfo00480 Glutathione metabolism SBML MML
pfo00500 Starch and sucrose metabolism SBML MML
pfo00520 Amino sugar and nucleotide sugar metabolism SBML MML
pfo00521 Streptomycin biosynthesis SBML MML
pfo00523 Polyketide sugar unit biosynthesis SBML MML
pfo00530 (Undocumented) SBML MML
pfo00540 Lipopolysaccharide biosynthesis SBML MML
pfo00550 Peptidoglycan biosynthesis SBML MML
pfo00561 Glycerolipid metabolism SBML MML
pfo00562 Inositol phosphate metabolism SBML MML
pfo00564 Glycerophospholipid metabolism SBML MML
pfo00590 Arachidonic acid metabolism SBML MML
pfo00592 alpha-Linolenic acid metabolism SBML MML
pfo00620 Pyruvate metabolism SBML MML
pfo00622 Toluene and xylene degradation SBML MML
pfo00623 2,4-Dichlorobenzoate degradation SBML MML
pfo00624 1- and 2-Methylnaphthalene degradation SBML MML
pfo00626 Naphthalene and anthracene degradation SBML MML
pfo00627 1,4-Dichlorobenzene degradation SBML MML
pfo00630 Glyoxylate and dicarboxylate metabolism SBML MML
pfo00631 1,2-Dichloroethane degradation SBML MML
pfo00632 (Undocumented) SBML MML
pfo00633 Trinitrotoluene degradation SBML MML
pfo00640 Propanoate metabolism SBML MML
pfo00641 3-Chloroacrylic acid degradation SBML MML
pfo00643 Styrene degradation SBML MML
pfo00650 Butanoate metabolism SBML MML
pfo00660 C5-Branched dibasic acid metabolism SBML MML
pfo00670 One carbon pool by folate SBML MML
pfo00680 Methane metabolism SBML MML
pfo00710 (Undocumented) SBML MML
pfo00720 (Undocumented) SBML MML
pfo00730 Thiamine metabolism SBML MML
pfo00740 Riboflavin metabolism SBML MML
pfo00750 Vitamin B6 metabolism SBML MML
pfo00760 Nicotinate and nicotinamide metabolism SBML MML
pfo00770 Pantothenate and CoA biosynthesis SBML MML
pfo00780 Biotin metabolism SBML MML
pfo00785 Lipoic acid metabolism SBML MML
pfo00790 Folate biosynthesis SBML MML
pfo00791 Atrazine degradation SBML MML
pfo00860 Porphyrin and chlorophyll metabolism SBML MML
pfo00900 Terpenoid backbone biosynthesis SBML MML
pfo00903 (Undocumented) SBML MML
pfo00910 Nitrogen metabolism SBML MML
pfo00920 Sulfur metabolism SBML MML
pfo00930 Caprolactam degradation SBML MML
pfo00950 (Undocumented) SBML MML
pfo00960 (Undocumented) SBML MML
pfo00970 Aminoacyl-tRNA biosynthesis SBML MML
pfo00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pfo00982 (Undocumented) SBML MML
pfo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.