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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pdi: Parabacteroides distasonis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pdi00010 Glycolysis / Gluconeogenesis SBML MML
pdi00020 Citrate cycle (TCA cycle) SBML MML
pdi00030 Pentose phosphate pathway SBML MML
pdi00031 (Undocumented) SBML MML
pdi00040 Pentose and glucuronate interconversions SBML MML
pdi00051 Fructose and mannose metabolism SBML MML
pdi00052 Galactose metabolism SBML MML
pdi00061 Fatty acid biosynthesis SBML MML
pdi00071 Fatty acid metabolism SBML MML
pdi00100 (Undocumented) SBML MML
pdi00120 (Undocumented) SBML MML
pdi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pdi00150 Androgen and estrogen metabolism SBML MML
pdi00220 (Undocumented) SBML MML
pdi00230 Purine metabolism SBML MML
pdi00240 Pyrimidine metabolism SBML MML
pdi00251 (Undocumented) SBML MML
pdi00252 (Undocumented) SBML MML
pdi00260 Glycine, serine and threonine metabolism SBML MML
pdi00271 (Undocumented) SBML MML
pdi00272 (Undocumented) SBML MML
pdi00280 Valine, leucine and isoleucine degradation SBML MML
pdi00281 Geraniol degradation SBML MML
pdi00290 Valine, leucine and isoleucine biosynthesis SBML MML
pdi00300 Lysine biosynthesis SBML MML
pdi00330 Arginine and proline metabolism SBML MML
pdi00340 Histidine metabolism SBML MML
pdi00350 Tyrosine metabolism SBML MML
pdi00360 Phenylalanine metabolism SBML MML
pdi00361 gamma-Hexachlorocyclohexane degradation SBML MML
pdi00362 (Undocumented) SBML MML
pdi00363 Bisphenol A degradation SBML MML
pdi00380 Tryptophan metabolism SBML MML
pdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pdi00401 Novobiocin biosynthesis SBML MML
pdi00410 beta-Alanine metabolism SBML MML
pdi00430 Taurine and hypotaurine metabolism SBML MML
pdi00440 Phosphonate and phosphinate metabolism SBML MML
pdi00450 Selenoamino acid metabolism SBML MML
pdi00460 (Undocumented) SBML MML
pdi00471 D-Glutamine and D-glutamate metabolism SBML MML
pdi00473 D-Alanine metabolism SBML MML
pdi00480 Glutathione metabolism SBML MML
pdi00500 Starch and sucrose metabolism SBML MML
pdi00520 Amino sugar and nucleotide sugar metabolism SBML MML
pdi00521 Streptomycin biosynthesis SBML MML
pdi00523 Polyketide sugar unit biosynthesis SBML MML
pdi00530 (Undocumented) SBML MML
pdi00540 Lipopolysaccharide biosynthesis SBML MML
pdi00550 Peptidoglycan biosynthesis SBML MML
pdi00561 Glycerolipid metabolism SBML MML
pdi00562 Inositol phosphate metabolism SBML MML
pdi00564 Glycerophospholipid metabolism SBML MML
pdi00600 Sphingolipid metabolism SBML MML
pdi00620 Pyruvate metabolism SBML MML
pdi00624 1- and 2-Methylnaphthalene degradation SBML MML
pdi00626 Naphthalene and anthracene degradation SBML MML
pdi00630 Glyoxylate and dicarboxylate metabolism SBML MML
pdi00632 (Undocumented) SBML MML
pdi00640 Propanoate metabolism SBML MML
pdi00641 3-Chloroacrylic acid degradation SBML MML
pdi00650 Butanoate metabolism SBML MML
pdi00670 One carbon pool by folate SBML MML
pdi00680 Methane metabolism SBML MML
pdi00710 (Undocumented) SBML MML
pdi00720 (Undocumented) SBML MML
pdi00730 Thiamine metabolism SBML MML
pdi00740 Riboflavin metabolism SBML MML
pdi00750 Vitamin B6 metabolism SBML MML
pdi00760 Nicotinate and nicotinamide metabolism SBML MML
pdi00770 Pantothenate and CoA biosynthesis SBML MML
pdi00780 Biotin metabolism SBML MML
pdi00785 Lipoic acid metabolism SBML MML
pdi00790 Folate biosynthesis SBML MML
pdi00860 Porphyrin and chlorophyll metabolism SBML MML
pdi00900 Terpenoid backbone biosynthesis SBML MML
pdi00903 (Undocumented) SBML MML
pdi00910 Nitrogen metabolism SBML MML
pdi00920 Sulfur metabolism SBML MML
pdi00940 (Undocumented) SBML MML
pdi00950 (Undocumented) SBML MML
pdi00960 (Undocumented) SBML MML
pdi00970 Aminoacyl-tRNA biosynthesis SBML MML
pdi00982 (Undocumented) SBML MML
pdi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.