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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pde: Paracoccus denitrificans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pde00010 Glycolysis / Gluconeogenesis SBML MML
pde00020 Citrate cycle (TCA cycle) SBML MML
pde00030 Pentose phosphate pathway SBML MML
pde00031 (Undocumented) SBML MML
pde00040 Pentose and glucuronate interconversions SBML MML
pde00051 Fructose and mannose metabolism SBML MML
pde00052 Galactose metabolism SBML MML
pde00053 Ascorbate and aldarate metabolism SBML MML
pde00061 Fatty acid biosynthesis SBML MML
pde00062 Fatty acid elongation in mitochondria SBML MML
pde00071 Fatty acid metabolism SBML MML
pde00072 Synthesis and degradation of ketone bodies SBML MML
pde00100 (Undocumented) SBML MML
pde00120 (Undocumented) SBML MML
pde00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pde00220 (Undocumented) SBML MML
pde00230 Purine metabolism SBML MML
pde00240 Pyrimidine metabolism SBML MML
pde00251 (Undocumented) SBML MML
pde00252 (Undocumented) SBML MML
pde00260 Glycine, serine and threonine metabolism SBML MML
pde00271 (Undocumented) SBML MML
pde00272 (Undocumented) SBML MML
pde00280 Valine, leucine and isoleucine degradation SBML MML
pde00281 Geraniol degradation SBML MML
pde00290 Valine, leucine and isoleucine biosynthesis SBML MML
pde00300 Lysine biosynthesis SBML MML
pde00310 Lysine degradation SBML MML
pde00311 Penicillin and cephalosporin biosynthesis SBML MML
pde00330 Arginine and proline metabolism SBML MML
pde00340 Histidine metabolism SBML MML
pde00350 Tyrosine metabolism SBML MML
pde00360 Phenylalanine metabolism SBML MML
pde00361 gamma-Hexachlorocyclohexane degradation SBML MML
pde00362 (Undocumented) SBML MML
pde00364 Fluorobenzoate degradation SBML MML
pde00380 Tryptophan metabolism SBML MML
pde00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pde00401 Novobiocin biosynthesis SBML MML
pde00410 beta-Alanine metabolism SBML MML
pde00430 Taurine and hypotaurine metabolism SBML MML
pde00450 Selenoamino acid metabolism SBML MML
pde00460 (Undocumented) SBML MML
pde00471 D-Glutamine and D-glutamate metabolism SBML MML
pde00473 D-Alanine metabolism SBML MML
pde00480 Glutathione metabolism SBML MML
pde00500 Starch and sucrose metabolism SBML MML
pde00520 Amino sugar and nucleotide sugar metabolism SBML MML
pde00521 Streptomycin biosynthesis SBML MML
pde00523 Polyketide sugar unit biosynthesis SBML MML
pde00530 (Undocumented) SBML MML
pde00540 Lipopolysaccharide biosynthesis SBML MML
pde00550 Peptidoglycan biosynthesis SBML MML
pde00561 Glycerolipid metabolism SBML MML
pde00562 Inositol phosphate metabolism SBML MML
pde00564 Glycerophospholipid metabolism SBML MML
pde00592 alpha-Linolenic acid metabolism SBML MML
pde00620 Pyruvate metabolism SBML MML
pde00622 Toluene and xylene degradation SBML MML
pde00623 2,4-Dichlorobenzoate degradation SBML MML
pde00624 1- and 2-Methylnaphthalene degradation SBML MML
pde00627 1,4-Dichlorobenzene degradation SBML MML
pde00628 Fluorene degradation SBML MML
pde00630 Glyoxylate and dicarboxylate metabolism SBML MML
pde00632 (Undocumented) SBML MML
pde00640 Propanoate metabolism SBML MML
pde00641 3-Chloroacrylic acid degradation SBML MML
pde00642 Ethylbenzene degradation SBML MML
pde00643 Styrene degradation SBML MML
pde00650 Butanoate metabolism SBML MML
pde00660 C5-Branched dibasic acid metabolism SBML MML
pde00670 One carbon pool by folate SBML MML
pde00680 Methane metabolism SBML MML
pde00710 (Undocumented) SBML MML
pde00720 (Undocumented) SBML MML
pde00730 Thiamine metabolism SBML MML
pde00740 Riboflavin metabolism SBML MML
pde00750 Vitamin B6 metabolism SBML MML
pde00760 Nicotinate and nicotinamide metabolism SBML MML
pde00770 Pantothenate and CoA biosynthesis SBML MML
pde00780 Biotin metabolism SBML MML
pde00785 Lipoic acid metabolism SBML MML
pde00790 Folate biosynthesis SBML MML
pde00791 Atrazine degradation SBML MML
pde00860 Porphyrin and chlorophyll metabolism SBML MML
pde00900 Terpenoid backbone biosynthesis SBML MML
pde00903 (Undocumented) SBML MML
pde00910 Nitrogen metabolism SBML MML
pde00920 Sulfur metabolism SBML MML
pde00930 Caprolactam degradation SBML MML
pde00940 (Undocumented) SBML MML
pde00950 (Undocumented) SBML MML
pde00960 (Undocumented) SBML MML
pde00970 Aminoacyl-tRNA biosynthesis SBML MML
pde00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pde00982 (Undocumented) SBML MML
pde00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.