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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pcu: Candidatus Protochlamydia amoebophila

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pcu00010 Glycolysis / Gluconeogenesis SBML MML
pcu00020 Citrate cycle (TCA cycle) SBML MML
pcu00030 Pentose phosphate pathway SBML MML
pcu00040 Pentose and glucuronate interconversions SBML MML
pcu00051 Fructose and mannose metabolism SBML MML
pcu00052 Galactose metabolism SBML MML
pcu00061 Fatty acid biosynthesis SBML MML
pcu00100 (Undocumented) SBML MML
pcu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pcu00230 Purine metabolism SBML MML
pcu00240 Pyrimidine metabolism SBML MML
pcu00251 (Undocumented) SBML MML
pcu00252 (Undocumented) SBML MML
pcu00260 Glycine, serine and threonine metabolism SBML MML
pcu00271 (Undocumented) SBML MML
pcu00272 (Undocumented) SBML MML
pcu00280 Valine, leucine and isoleucine degradation SBML MML
pcu00290 Valine, leucine and isoleucine biosynthesis SBML MML
pcu00300 Lysine biosynthesis SBML MML
pcu00310 Lysine degradation SBML MML
pcu00330 Arginine and proline metabolism SBML MML
pcu00340 Histidine metabolism SBML MML
pcu00350 Tyrosine metabolism SBML MML
pcu00380 Tryptophan metabolism SBML MML
pcu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pcu00430 Taurine and hypotaurine metabolism SBML MML
pcu00450 Selenoamino acid metabolism SBML MML
pcu00471 D-Glutamine and D-glutamate metabolism SBML MML
pcu00480 Glutathione metabolism SBML MML
pcu00500 Starch and sucrose metabolism SBML MML
pcu00520 Amino sugar and nucleotide sugar metabolism SBML MML
pcu00521 Streptomycin biosynthesis SBML MML
pcu00523 Polyketide sugar unit biosynthesis SBML MML
pcu00530 (Undocumented) SBML MML
pcu00540 Lipopolysaccharide biosynthesis SBML MML
pcu00550 Peptidoglycan biosynthesis SBML MML
pcu00561 Glycerolipid metabolism SBML MML
pcu00562 Inositol phosphate metabolism SBML MML
pcu00564 Glycerophospholipid metabolism SBML MML
pcu00620 Pyruvate metabolism SBML MML
pcu00630 Glyoxylate and dicarboxylate metabolism SBML MML
pcu00632 (Undocumented) SBML MML
pcu00640 Propanoate metabolism SBML MML
pcu00650 Butanoate metabolism SBML MML
pcu00670 One carbon pool by folate SBML MML
pcu00710 (Undocumented) SBML MML
pcu00720 (Undocumented) SBML MML
pcu00730 Thiamine metabolism SBML MML
pcu00740 Riboflavin metabolism SBML MML
pcu00760 Nicotinate and nicotinamide metabolism SBML MML
pcu00770 Pantothenate and CoA biosynthesis SBML MML
pcu00780 Biotin metabolism SBML MML
pcu00785 Lipoic acid metabolism SBML MML
pcu00790 Folate biosynthesis SBML MML
pcu00860 Porphyrin and chlorophyll metabolism SBML MML
pcu00900 Terpenoid backbone biosynthesis SBML MML
pcu00910 Nitrogen metabolism SBML MML
pcu00970 Aminoacyl-tRNA biosynthesis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.