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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pca: Pelobacter carbinolicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pca00010 Glycolysis / Gluconeogenesis SBML MML
pca00020 Citrate cycle (TCA cycle) SBML MML
pca00030 Pentose phosphate pathway SBML MML
pca00031 (Undocumented) SBML MML
pca00040 Pentose and glucuronate interconversions SBML MML
pca00051 Fructose and mannose metabolism SBML MML
pca00052 Galactose metabolism SBML MML
pca00053 Ascorbate and aldarate metabolism SBML MML
pca00061 Fatty acid biosynthesis SBML MML
pca00071 Fatty acid metabolism SBML MML
pca00100 (Undocumented) SBML MML
pca00120 (Undocumented) SBML MML
pca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pca00220 (Undocumented) SBML MML
pca00230 Purine metabolism SBML MML
pca00240 Pyrimidine metabolism SBML MML
pca00251 (Undocumented) SBML MML
pca00252 (Undocumented) SBML MML
pca00260 Glycine, serine and threonine metabolism SBML MML
pca00271 (Undocumented) SBML MML
pca00272 (Undocumented) SBML MML
pca00280 Valine, leucine and isoleucine degradation SBML MML
pca00290 Valine, leucine and isoleucine biosynthesis SBML MML
pca00300 Lysine biosynthesis SBML MML
pca00310 Lysine degradation SBML MML
pca00330 Arginine and proline metabolism SBML MML
pca00340 Histidine metabolism SBML MML
pca00350 Tyrosine metabolism SBML MML
pca00360 Phenylalanine metabolism SBML MML
pca00361 gamma-Hexachlorocyclohexane degradation SBML MML
pca00362 (Undocumented) SBML MML
pca00363 Bisphenol A degradation SBML MML
pca00380 Tryptophan metabolism SBML MML
pca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pca00401 Novobiocin biosynthesis SBML MML
pca00410 beta-Alanine metabolism SBML MML
pca00430 Taurine and hypotaurine metabolism SBML MML
pca00440 Phosphonate and phosphinate metabolism SBML MML
pca00450 Selenoamino acid metabolism SBML MML
pca00471 D-Glutamine and D-glutamate metabolism SBML MML
pca00473 D-Alanine metabolism SBML MML
pca00480 Glutathione metabolism SBML MML
pca00500 Starch and sucrose metabolism SBML MML
pca00510 (Undocumented) SBML MML
pca00520 Amino sugar and nucleotide sugar metabolism SBML MML
pca00521 Streptomycin biosynthesis SBML MML
pca00523 Polyketide sugar unit biosynthesis SBML MML
pca00530 (Undocumented) SBML MML
pca00540 Lipopolysaccharide biosynthesis SBML MML
pca00550 Peptidoglycan biosynthesis SBML MML
pca00561 Glycerolipid metabolism SBML MML
pca00562 Inositol phosphate metabolism SBML MML
pca00564 Glycerophospholipid metabolism SBML MML
pca00620 Pyruvate metabolism SBML MML
pca00624 1- and 2-Methylnaphthalene degradation SBML MML
pca00625 (Undocumented) SBML MML
pca00626 Naphthalene and anthracene degradation SBML MML
pca00628 Fluorene degradation SBML MML
pca00630 Glyoxylate and dicarboxylate metabolism SBML MML
pca00632 (Undocumented) SBML MML
pca00633 Trinitrotoluene degradation SBML MML
pca00640 Propanoate metabolism SBML MML
pca00641 3-Chloroacrylic acid degradation SBML MML
pca00650 Butanoate metabolism SBML MML
pca00660 C5-Branched dibasic acid metabolism SBML MML
pca00670 One carbon pool by folate SBML MML
pca00680 Methane metabolism SBML MML
pca00710 (Undocumented) SBML MML
pca00720 (Undocumented) SBML MML
pca00730 Thiamine metabolism SBML MML
pca00740 Riboflavin metabolism SBML MML
pca00750 Vitamin B6 metabolism SBML MML
pca00760 Nicotinate and nicotinamide metabolism SBML MML
pca00770 Pantothenate and CoA biosynthesis SBML MML
pca00780 Biotin metabolism SBML MML
pca00785 Lipoic acid metabolism SBML MML
pca00790 Folate biosynthesis SBML MML
pca00860 Porphyrin and chlorophyll metabolism SBML MML
pca00900 Terpenoid backbone biosynthesis SBML MML
pca00903 (Undocumented) SBML MML
pca00910 Nitrogen metabolism SBML MML
pca00920 Sulfur metabolism SBML MML
pca00940 (Undocumented) SBML MML
pca00950 (Undocumented) SBML MML
pca00960 (Undocumented) SBML MML
pca00970 Aminoacyl-tRNA biosynthesis SBML MML
pca00982 (Undocumented) SBML MML
pca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.