This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism par: Psychrobacter arcticum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
par00010 Glycolysis / Gluconeogenesis SBML MML
par00020 Citrate cycle (TCA cycle) SBML MML
par00030 Pentose phosphate pathway SBML MML
par00031 (Undocumented) SBML MML
par00040 Pentose and glucuronate interconversions SBML MML
par00051 Fructose and mannose metabolism SBML MML
par00052 Galactose metabolism SBML MML
par00053 Ascorbate and aldarate metabolism SBML MML
par00061 Fatty acid biosynthesis SBML MML
par00062 Fatty acid elongation in mitochondria SBML MML
par00071 Fatty acid metabolism SBML MML
par00072 Synthesis and degradation of ketone bodies SBML MML
par00100 (Undocumented) SBML MML
par00120 (Undocumented) SBML MML
par00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
par00150 Androgen and estrogen metabolism SBML MML
par00220 (Undocumented) SBML MML
par00230 Purine metabolism SBML MML
par00240 Pyrimidine metabolism SBML MML
par00251 (Undocumented) SBML MML
par00252 (Undocumented) SBML MML
par00260 Glycine, serine and threonine metabolism SBML MML
par00271 (Undocumented) SBML MML
par00272 (Undocumented) SBML MML
par00280 Valine, leucine and isoleucine degradation SBML MML
par00281 Geraniol degradation SBML MML
par00290 Valine, leucine and isoleucine biosynthesis SBML MML
par00300 Lysine biosynthesis SBML MML
par00310 Lysine degradation SBML MML
par00330 Arginine and proline metabolism SBML MML
par00340 Histidine metabolism SBML MML
par00350 Tyrosine metabolism SBML MML
par00360 Phenylalanine metabolism SBML MML
par00361 gamma-Hexachlorocyclohexane degradation SBML MML
par00362 (Undocumented) SBML MML
par00363 Bisphenol A degradation SBML MML
par00380 Tryptophan metabolism SBML MML
par00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
par00401 Novobiocin biosynthesis SBML MML
par00410 beta-Alanine metabolism SBML MML
par00430 Taurine and hypotaurine metabolism SBML MML
par00450 Selenoamino acid metabolism SBML MML
par00460 (Undocumented) SBML MML
par00471 D-Glutamine and D-glutamate metabolism SBML MML
par00472 D-Arginine and D-ornithine metabolism SBML MML
par00473 D-Alanine metabolism SBML MML
par00480 Glutathione metabolism SBML MML
par00500 Starch and sucrose metabolism SBML MML
par00520 Amino sugar and nucleotide sugar metabolism SBML MML
par00521 Streptomycin biosynthesis SBML MML
par00523 Polyketide sugar unit biosynthesis SBML MML
par00530 (Undocumented) SBML MML
par00540 Lipopolysaccharide biosynthesis SBML MML
par00550 Peptidoglycan biosynthesis SBML MML
par00561 Glycerolipid metabolism SBML MML
par00562 Inositol phosphate metabolism SBML MML
par00564 Glycerophospholipid metabolism SBML MML
par00592 alpha-Linolenic acid metabolism SBML MML
par00620 Pyruvate metabolism SBML MML
par00622 Toluene and xylene degradation SBML MML
par00624 1- and 2-Methylnaphthalene degradation SBML MML
par00626 Naphthalene and anthracene degradation SBML MML
par00627 1,4-Dichlorobenzene degradation SBML MML
par00630 Glyoxylate and dicarboxylate metabolism SBML MML
par00631 1,2-Dichloroethane degradation SBML MML
par00632 (Undocumented) SBML MML
par00633 Trinitrotoluene degradation SBML MML
par00640 Propanoate metabolism SBML MML
par00641 3-Chloroacrylic acid degradation SBML MML
par00650 Butanoate metabolism SBML MML
par00660 C5-Branched dibasic acid metabolism SBML MML
par00670 One carbon pool by folate SBML MML
par00680 Methane metabolism SBML MML
par00710 (Undocumented) SBML MML
par00720 (Undocumented) SBML MML
par00730 Thiamine metabolism SBML MML
par00740 Riboflavin metabolism SBML MML
par00750 Vitamin B6 metabolism SBML MML
par00760 Nicotinate and nicotinamide metabolism SBML MML
par00770 Pantothenate and CoA biosynthesis SBML MML
par00780 Biotin metabolism SBML MML
par00785 Lipoic acid metabolism SBML MML
par00790 Folate biosynthesis SBML MML
par00791 Atrazine degradation SBML MML
par00860 Porphyrin and chlorophyll metabolism SBML MML
par00900 Terpenoid backbone biosynthesis SBML MML
par00903 (Undocumented) SBML MML
par00904 (Undocumented) SBML MML
par00910 Nitrogen metabolism SBML MML
par00920 Sulfur metabolism SBML MML
par00930 Caprolactam degradation SBML MML
par00940 (Undocumented) SBML MML
par00941 (Undocumented) SBML MML
par00950 (Undocumented) SBML MML
par00960 (Undocumented) SBML MML
par00970 Aminoacyl-tRNA biosynthesis SBML MML
par00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
par00982 (Undocumented) SBML MML
par00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.