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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pan: Podospora anserina

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pan00010 Glycolysis / Gluconeogenesis SBML MML
pan00020 Citrate cycle (TCA cycle) SBML MML
pan00030 Pentose phosphate pathway SBML MML
pan00031 (Undocumented) SBML MML
pan00040 Pentose and glucuronate interconversions SBML MML
pan00051 Fructose and mannose metabolism SBML MML
pan00052 Galactose metabolism SBML MML
pan00053 Ascorbate and aldarate metabolism SBML MML
pan00061 Fatty acid biosynthesis SBML MML
pan00062 Fatty acid elongation in mitochondria SBML MML
pan00071 Fatty acid metabolism SBML MML
pan00072 Synthesis and degradation of ketone bodies SBML MML
pan00100 (Undocumented) SBML MML
pan00120 (Undocumented) SBML MML
pan00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pan00140 (Undocumented) SBML MML
pan00150 Androgen and estrogen metabolism SBML MML
pan00220 (Undocumented) SBML MML
pan00230 Purine metabolism SBML MML
pan00232 Caffeine metabolism SBML MML
pan00240 Pyrimidine metabolism SBML MML
pan00251 (Undocumented) SBML MML
pan00252 (Undocumented) SBML MML
pan00260 Glycine, serine and threonine metabolism SBML MML
pan00271 (Undocumented) SBML MML
pan00272 (Undocumented) SBML MML
pan00280 Valine, leucine and isoleucine degradation SBML MML
pan00281 Geraniol degradation SBML MML
pan00290 Valine, leucine and isoleucine biosynthesis SBML MML
pan00300 Lysine biosynthesis SBML MML
pan00310 Lysine degradation SBML MML
pan00330 Arginine and proline metabolism SBML MML
pan00340 Histidine metabolism SBML MML
pan00350 Tyrosine metabolism SBML MML
pan00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pan00360 Phenylalanine metabolism SBML MML
pan00361 gamma-Hexachlorocyclohexane degradation SBML MML
pan00362 (Undocumented) SBML MML
pan00363 Bisphenol A degradation SBML MML
pan00364 Fluorobenzoate degradation SBML MML
pan00380 Tryptophan metabolism SBML MML
pan00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pan00401 Novobiocin biosynthesis SBML MML
pan00410 beta-Alanine metabolism SBML MML
pan00430 Taurine and hypotaurine metabolism SBML MML
pan00440 Phosphonate and phosphinate metabolism SBML MML
pan00450 Selenoamino acid metabolism SBML MML
pan00460 (Undocumented) SBML MML
pan00472 D-Arginine and D-ornithine metabolism SBML MML
pan00480 Glutathione metabolism SBML MML
pan00500 Starch and sucrose metabolism SBML MML
pan00510 (Undocumented) SBML MML
pan00520 Amino sugar and nucleotide sugar metabolism SBML MML
pan00521 Streptomycin biosynthesis SBML MML
pan00530 (Undocumented) SBML MML
pan00550 Peptidoglycan biosynthesis SBML MML
pan00561 Glycerolipid metabolism SBML MML
pan00562 Inositol phosphate metabolism SBML MML
pan00564 Glycerophospholipid metabolism SBML MML
pan00565 Ether lipid metabolism SBML MML
pan00590 Arachidonic acid metabolism SBML MML
pan00591 Linoleic acid metabolism SBML MML
pan00592 alpha-Linolenic acid metabolism SBML MML
pan00600 Sphingolipid metabolism SBML MML
pan00620 Pyruvate metabolism SBML MML
pan00622 Toluene and xylene degradation SBML MML
pan00623 2,4-Dichlorobenzoate degradation SBML MML
pan00624 1- and 2-Methylnaphthalene degradation SBML MML
pan00625 (Undocumented) SBML MML
pan00626 Naphthalene and anthracene degradation SBML MML
pan00627 1,4-Dichlorobenzene degradation SBML MML
pan00628 Fluorene degradation SBML MML
pan00630 Glyoxylate and dicarboxylate metabolism SBML MML
pan00631 1,2-Dichloroethane degradation SBML MML
pan00632 (Undocumented) SBML MML
pan00633 Trinitrotoluene degradation SBML MML
pan00640 Propanoate metabolism SBML MML
pan00641 3-Chloroacrylic acid degradation SBML MML
pan00642 Ethylbenzene degradation SBML MML
pan00643 Styrene degradation SBML MML
pan00650 Butanoate metabolism SBML MML
pan00660 C5-Branched dibasic acid metabolism SBML MML
pan00670 One carbon pool by folate SBML MML
pan00680 Methane metabolism SBML MML
pan00710 (Undocumented) SBML MML
pan00720 (Undocumented) SBML MML
pan00730 Thiamine metabolism SBML MML
pan00740 Riboflavin metabolism SBML MML
pan00750 Vitamin B6 metabolism SBML MML
pan00760 Nicotinate and nicotinamide metabolism SBML MML
pan00770 Pantothenate and CoA biosynthesis SBML MML
pan00780 Biotin metabolism SBML MML
pan00790 Folate biosynthesis SBML MML
pan00791 Atrazine degradation SBML MML
pan00860 Porphyrin and chlorophyll metabolism SBML MML
pan00900 Terpenoid backbone biosynthesis SBML MML
pan00903 (Undocumented) SBML MML
pan00904 (Undocumented) SBML MML
pan00910 Nitrogen metabolism SBML MML
pan00920 Sulfur metabolism SBML MML
pan00930 Caprolactam degradation SBML MML
pan00940 (Undocumented) SBML MML
pan00941 (Undocumented) SBML MML
pan00950 (Undocumented) SBML MML
pan00960 (Undocumented) SBML MML
pan00970 Aminoacyl-tRNA biosynthesis SBML MML
pan00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pan00982 (Undocumented) SBML MML
pan00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.