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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pai: Pyrobaculum aerophilum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pai00010 Glycolysis / Gluconeogenesis SBML MML
pai00020 Citrate cycle (TCA cycle) SBML MML
pai00030 Pentose phosphate pathway SBML MML
pai00051 Fructose and mannose metabolism SBML MML
pai00052 Galactose metabolism SBML MML
pai00061 Fatty acid biosynthesis SBML MML
pai00062 Fatty acid elongation in mitochondria SBML MML
pai00071 Fatty acid metabolism SBML MML
pai00100 (Undocumented) SBML MML
pai00120 (Undocumented) SBML MML
pai00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pai00220 (Undocumented) SBML MML
pai00230 Purine metabolism SBML MML
pai00240 Pyrimidine metabolism SBML MML
pai00251 (Undocumented) SBML MML
pai00252 (Undocumented) SBML MML
pai00260 Glycine, serine and threonine metabolism SBML MML
pai00271 (Undocumented) SBML MML
pai00272 (Undocumented) SBML MML
pai00280 Valine, leucine and isoleucine degradation SBML MML
pai00281 Geraniol degradation SBML MML
pai00290 Valine, leucine and isoleucine biosynthesis SBML MML
pai00300 Lysine biosynthesis SBML MML
pai00310 Lysine degradation SBML MML
pai00330 Arginine and proline metabolism SBML MML
pai00340 Histidine metabolism SBML MML
pai00350 Tyrosine metabolism SBML MML
pai00360 Phenylalanine metabolism SBML MML
pai00380 Tryptophan metabolism SBML MML
pai00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pai00401 Novobiocin biosynthesis SBML MML
pai00410 beta-Alanine metabolism SBML MML
pai00450 Selenoamino acid metabolism SBML MML
pai00460 (Undocumented) SBML MML
pai00480 Glutathione metabolism SBML MML
pai00500 Starch and sucrose metabolism SBML MML
pai00510 (Undocumented) SBML MML
pai00520 Amino sugar and nucleotide sugar metabolism SBML MML
pai00521 Streptomycin biosynthesis SBML MML
pai00550 Peptidoglycan biosynthesis SBML MML
pai00562 Inositol phosphate metabolism SBML MML
pai00564 Glycerophospholipid metabolism SBML MML
pai00592 alpha-Linolenic acid metabolism SBML MML
pai00620 Pyruvate metabolism SBML MML
pai00624 1- and 2-Methylnaphthalene degradation SBML MML
pai00630 Glyoxylate and dicarboxylate metabolism SBML MML
pai00632 (Undocumented) SBML MML
pai00633 Trinitrotoluene degradation SBML MML
pai00640 Propanoate metabolism SBML MML
pai00641 3-Chloroacrylic acid degradation SBML MML
pai00650 Butanoate metabolism SBML MML
pai00660 C5-Branched dibasic acid metabolism SBML MML
pai00670 One carbon pool by folate SBML MML
pai00680 Methane metabolism SBML MML
pai00710 (Undocumented) SBML MML
pai00720 (Undocumented) SBML MML
pai00730 Thiamine metabolism SBML MML
pai00740 Riboflavin metabolism SBML MML
pai00750 Vitamin B6 metabolism SBML MML
pai00760 Nicotinate and nicotinamide metabolism SBML MML
pai00770 Pantothenate and CoA biosynthesis SBML MML
pai00785 Lipoic acid metabolism SBML MML
pai00790 Folate biosynthesis SBML MML
pai00860 Porphyrin and chlorophyll metabolism SBML MML
pai00900 Terpenoid backbone biosynthesis SBML MML
pai00903 (Undocumented) SBML MML
pai00910 Nitrogen metabolism SBML MML
pai00920 Sulfur metabolism SBML MML
pai00930 Caprolactam degradation SBML MML
pai00970 Aminoacyl-tRNA biosynthesis SBML MML
pai00982 (Undocumented) SBML MML
pai00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.