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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pae: Pseudomonas aeruginosa PAO1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pae00010 Glycolysis / Gluconeogenesis SBML MML
pae00020 Citrate cycle (TCA cycle) SBML MML
pae00030 Pentose phosphate pathway SBML MML
pae00031 (Undocumented) SBML MML
pae00040 Pentose and glucuronate interconversions SBML MML
pae00051 Fructose and mannose metabolism SBML MML
pae00052 Galactose metabolism SBML MML
pae00053 Ascorbate and aldarate metabolism SBML MML
pae00061 Fatty acid biosynthesis SBML MML
pae00062 Fatty acid elongation in mitochondria SBML MML
pae00071 Fatty acid metabolism SBML MML
pae00072 Synthesis and degradation of ketone bodies SBML MML
pae00100 (Undocumented) SBML MML
pae00120 (Undocumented) SBML MML
pae00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pae00150 Androgen and estrogen metabolism SBML MML
pae00220 (Undocumented) SBML MML
pae00230 Purine metabolism SBML MML
pae00240 Pyrimidine metabolism SBML MML
pae00251 (Undocumented) SBML MML
pae00252 (Undocumented) SBML MML
pae00260 Glycine, serine and threonine metabolism SBML MML
pae00271 (Undocumented) SBML MML
pae00272 (Undocumented) SBML MML
pae00280 Valine, leucine and isoleucine degradation SBML MML
pae00281 Geraniol degradation SBML MML
pae00290 Valine, leucine and isoleucine biosynthesis SBML MML
pae00300 Lysine biosynthesis SBML MML
pae00310 Lysine degradation SBML MML
pae00330 Arginine and proline metabolism SBML MML
pae00340 Histidine metabolism SBML MML
pae00350 Tyrosine metabolism SBML MML
pae00360 Phenylalanine metabolism SBML MML
pae00361 gamma-Hexachlorocyclohexane degradation SBML MML
pae00362 (Undocumented) SBML MML
pae00363 Bisphenol A degradation SBML MML
pae00364 Fluorobenzoate degradation SBML MML
pae00380 Tryptophan metabolism SBML MML
pae00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pae00401 Novobiocin biosynthesis SBML MML
pae00410 beta-Alanine metabolism SBML MML
pae00430 Taurine and hypotaurine metabolism SBML MML
pae00440 Phosphonate and phosphinate metabolism SBML MML
pae00450 Selenoamino acid metabolism SBML MML
pae00460 (Undocumented) SBML MML
pae00471 D-Glutamine and D-glutamate metabolism SBML MML
pae00473 D-Alanine metabolism SBML MML
pae00480 Glutathione metabolism SBML MML
pae00500 Starch and sucrose metabolism SBML MML
pae00510 (Undocumented) SBML MML
pae00520 Amino sugar and nucleotide sugar metabolism SBML MML
pae00521 Streptomycin biosynthesis SBML MML
pae00523 Polyketide sugar unit biosynthesis SBML MML
pae00530 (Undocumented) SBML MML
pae00540 Lipopolysaccharide biosynthesis SBML MML
pae00550 Peptidoglycan biosynthesis SBML MML
pae00561 Glycerolipid metabolism SBML MML
pae00562 Inositol phosphate metabolism SBML MML
pae00564 Glycerophospholipid metabolism SBML MML
pae00565 Ether lipid metabolism SBML MML
pae00590 Arachidonic acid metabolism SBML MML
pae00592 alpha-Linolenic acid metabolism SBML MML
pae00620 Pyruvate metabolism SBML MML
pae00622 Toluene and xylene degradation SBML MML
pae00623 2,4-Dichlorobenzoate degradation SBML MML
pae00624 1- and 2-Methylnaphthalene degradation SBML MML
pae00626 Naphthalene and anthracene degradation SBML MML
pae00627 1,4-Dichlorobenzene degradation SBML MML
pae00629 Carbazole degradation SBML MML
pae00630 Glyoxylate and dicarboxylate metabolism SBML MML
pae00631 1,2-Dichloroethane degradation SBML MML
pae00632 (Undocumented) SBML MML
pae00640 Propanoate metabolism SBML MML
pae00641 3-Chloroacrylic acid degradation SBML MML
pae00643 Styrene degradation SBML MML
pae00650 Butanoate metabolism SBML MML
pae00660 C5-Branched dibasic acid metabolism SBML MML
pae00670 One carbon pool by folate SBML MML
pae00680 Methane metabolism SBML MML
pae00710 (Undocumented) SBML MML
pae00720 (Undocumented) SBML MML
pae00730 Thiamine metabolism SBML MML
pae00740 Riboflavin metabolism SBML MML
pae00750 Vitamin B6 metabolism SBML MML
pae00760 Nicotinate and nicotinamide metabolism SBML MML
pae00770 Pantothenate and CoA biosynthesis SBML MML
pae00780 Biotin metabolism SBML MML
pae00785 Lipoic acid metabolism SBML MML
pae00790 Folate biosynthesis SBML MML
pae00791 Atrazine degradation SBML MML
pae00860 Porphyrin and chlorophyll metabolism SBML MML
pae00900 Terpenoid backbone biosynthesis SBML MML
pae00903 (Undocumented) SBML MML
pae00910 Nitrogen metabolism SBML MML
pae00920 Sulfur metabolism SBML MML
pae00930 Caprolactam degradation SBML MML
pae00940 (Undocumented) SBML MML
pae00950 (Undocumented) SBML MML
pae00970 Aminoacyl-tRNA biosynthesis SBML MML
pae00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pae00982 (Undocumented) SBML MML
pae00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.