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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pac: Propionibacterium acnes

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pac00010 Glycolysis / Gluconeogenesis SBML MML
pac00020 Citrate cycle (TCA cycle) SBML MML
pac00030 Pentose phosphate pathway SBML MML
pac00031 (Undocumented) SBML MML
pac00040 Pentose and glucuronate interconversions SBML MML
pac00051 Fructose and mannose metabolism SBML MML
pac00052 Galactose metabolism SBML MML
pac00053 Ascorbate and aldarate metabolism SBML MML
pac00061 Fatty acid biosynthesis SBML MML
pac00071 Fatty acid metabolism SBML MML
pac00100 (Undocumented) SBML MML
pac00120 (Undocumented) SBML MML
pac00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pac00220 (Undocumented) SBML MML
pac00230 Purine metabolism SBML MML
pac00240 Pyrimidine metabolism SBML MML
pac00251 (Undocumented) SBML MML
pac00252 (Undocumented) SBML MML
pac00260 Glycine, serine and threonine metabolism SBML MML
pac00271 (Undocumented) SBML MML
pac00272 (Undocumented) SBML MML
pac00280 Valine, leucine and isoleucine degradation SBML MML
pac00281 Geraniol degradation SBML MML
pac00290 Valine, leucine and isoleucine biosynthesis SBML MML
pac00300 Lysine biosynthesis SBML MML
pac00310 Lysine degradation SBML MML
pac00330 Arginine and proline metabolism SBML MML
pac00340 Histidine metabolism SBML MML
pac00350 Tyrosine metabolism SBML MML
pac00360 Phenylalanine metabolism SBML MML
pac00380 Tryptophan metabolism SBML MML
pac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pac00401 Novobiocin biosynthesis SBML MML
pac00440 Phosphonate and phosphinate metabolism SBML MML
pac00450 Selenoamino acid metabolism SBML MML
pac00460 (Undocumented) SBML MML
pac00471 D-Glutamine and D-glutamate metabolism SBML MML
pac00473 D-Alanine metabolism SBML MML
pac00480 Glutathione metabolism SBML MML
pac00500 Starch and sucrose metabolism SBML MML
pac00520 Amino sugar and nucleotide sugar metabolism SBML MML
pac00521 Streptomycin biosynthesis SBML MML
pac00530 (Undocumented) SBML MML
pac00550 Peptidoglycan biosynthesis SBML MML
pac00561 Glycerolipid metabolism SBML MML
pac00564 Glycerophospholipid metabolism SBML MML
pac00600 Sphingolipid metabolism SBML MML
pac00620 Pyruvate metabolism SBML MML
pac00624 1- and 2-Methylnaphthalene degradation SBML MML
pac00630 Glyoxylate and dicarboxylate metabolism SBML MML
pac00632 (Undocumented) SBML MML
pac00640 Propanoate metabolism SBML MML
pac00641 3-Chloroacrylic acid degradation SBML MML
pac00650 Butanoate metabolism SBML MML
pac00660 C5-Branched dibasic acid metabolism SBML MML
pac00670 One carbon pool by folate SBML MML
pac00680 Methane metabolism SBML MML
pac00710 (Undocumented) SBML MML
pac00720 (Undocumented) SBML MML
pac00730 Thiamine metabolism SBML MML
pac00740 Riboflavin metabolism SBML MML
pac00750 Vitamin B6 metabolism SBML MML
pac00760 Nicotinate and nicotinamide metabolism SBML MML
pac00770 Pantothenate and CoA biosynthesis SBML MML
pac00780 Biotin metabolism SBML MML
pac00785 Lipoic acid metabolism SBML MML
pac00790 Folate biosynthesis SBML MML
pac00860 Porphyrin and chlorophyll metabolism SBML MML
pac00900 Terpenoid backbone biosynthesis SBML MML
pac00903 (Undocumented) SBML MML
pac00910 Nitrogen metabolism SBML MML
pac00920 Sulfur metabolism SBML MML
pac00930 Caprolactam degradation SBML MML
pac00960 (Undocumented) SBML MML
pac00970 Aminoacyl-tRNA biosynthesis SBML MML
pac00982 (Undocumented) SBML MML
pac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.