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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pab: Pyrococcus abyssi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pab00010 Glycolysis / Gluconeogenesis SBML MML
pab00020 Citrate cycle (TCA cycle) SBML MML
pab00030 Pentose phosphate pathway SBML MML
pab00040 Pentose and glucuronate interconversions SBML MML
pab00051 Fructose and mannose metabolism SBML MML
pab00052 Galactose metabolism SBML MML
pab00061 Fatty acid biosynthesis SBML MML
pab00071 Fatty acid metabolism SBML MML
pab00100 (Undocumented) SBML MML
pab00120 (Undocumented) SBML MML
pab00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pab00220 (Undocumented) SBML MML
pab00230 Purine metabolism SBML MML
pab00240 Pyrimidine metabolism SBML MML
pab00251 (Undocumented) SBML MML
pab00252 (Undocumented) SBML MML
pab00260 Glycine, serine and threonine metabolism SBML MML
pab00271 (Undocumented) SBML MML
pab00272 (Undocumented) SBML MML
pab00280 Valine, leucine and isoleucine degradation SBML MML
pab00281 Geraniol degradation SBML MML
pab00290 Valine, leucine and isoleucine biosynthesis SBML MML
pab00300 Lysine biosynthesis SBML MML
pab00330 Arginine and proline metabolism SBML MML
pab00340 Histidine metabolism SBML MML
pab00350 Tyrosine metabolism SBML MML
pab00360 Phenylalanine metabolism SBML MML
pab00361 gamma-Hexachlorocyclohexane degradation SBML MML
pab00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pab00401 Novobiocin biosynthesis SBML MML
pab00410 beta-Alanine metabolism SBML MML
pab00450 Selenoamino acid metabolism SBML MML
pab00460 (Undocumented) SBML MML
pab00500 Starch and sucrose metabolism SBML MML
pab00510 (Undocumented) SBML MML
pab00520 Amino sugar and nucleotide sugar metabolism SBML MML
pab00521 Streptomycin biosynthesis SBML MML
pab00523 Polyketide sugar unit biosynthesis SBML MML
pab00530 (Undocumented) SBML MML
pab00550 Peptidoglycan biosynthesis SBML MML
pab00561 Glycerolipid metabolism SBML MML
pab00562 Inositol phosphate metabolism SBML MML
pab00564 Glycerophospholipid metabolism SBML MML
pab00592 alpha-Linolenic acid metabolism SBML MML
pab00620 Pyruvate metabolism SBML MML
pab00630 Glyoxylate and dicarboxylate metabolism SBML MML
pab00640 Propanoate metabolism SBML MML
pab00650 Butanoate metabolism SBML MML
pab00670 One carbon pool by folate SBML MML
pab00680 Methane metabolism SBML MML
pab00710 (Undocumented) SBML MML
pab00720 (Undocumented) SBML MML
pab00730 Thiamine metabolism SBML MML
pab00750 Vitamin B6 metabolism SBML MML
pab00760 Nicotinate and nicotinamide metabolism SBML MML
pab00770 Pantothenate and CoA biosynthesis SBML MML
pab00780 Biotin metabolism SBML MML
pab00785 Lipoic acid metabolism SBML MML
pab00790 Folate biosynthesis SBML MML
pab00860 Porphyrin and chlorophyll metabolism SBML MML
pab00900 Terpenoid backbone biosynthesis SBML MML
pab00910 Nitrogen metabolism SBML MML
pab00920 Sulfur metabolism SBML MML
pab00950 (Undocumented) SBML MML
pab00970 Aminoacyl-tRNA biosynthesis SBML MML
pab00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.