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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ote: Opitutus terrae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ote00010 Glycolysis / Gluconeogenesis SBML MML
ote00020 Citrate cycle (TCA cycle) SBML MML
ote00030 Pentose phosphate pathway SBML MML
ote00031 (Undocumented) SBML MML
ote00040 Pentose and glucuronate interconversions SBML MML
ote00051 Fructose and mannose metabolism SBML MML
ote00052 Galactose metabolism SBML MML
ote00053 Ascorbate and aldarate metabolism SBML MML
ote00061 Fatty acid biosynthesis SBML MML
ote00071 Fatty acid metabolism SBML MML
ote00100 (Undocumented) SBML MML
ote00120 (Undocumented) SBML MML
ote00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ote00220 (Undocumented) SBML MML
ote00230 Purine metabolism SBML MML
ote00240 Pyrimidine metabolism SBML MML
ote00251 (Undocumented) SBML MML
ote00252 (Undocumented) SBML MML
ote00260 Glycine, serine and threonine metabolism SBML MML
ote00271 (Undocumented) SBML MML
ote00272 (Undocumented) SBML MML
ote00280 Valine, leucine and isoleucine degradation SBML MML
ote00281 Geraniol degradation SBML MML
ote00290 Valine, leucine and isoleucine biosynthesis SBML MML
ote00300 Lysine biosynthesis SBML MML
ote00310 Lysine degradation SBML MML
ote00311 Penicillin and cephalosporin biosynthesis SBML MML
ote00330 Arginine and proline metabolism SBML MML
ote00340 Histidine metabolism SBML MML
ote00350 Tyrosine metabolism SBML MML
ote00360 Phenylalanine metabolism SBML MML
ote00361 gamma-Hexachlorocyclohexane degradation SBML MML
ote00363 Bisphenol A degradation SBML MML
ote00380 Tryptophan metabolism SBML MML
ote00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ote00401 Novobiocin biosynthesis SBML MML
ote00410 beta-Alanine metabolism SBML MML
ote00430 Taurine and hypotaurine metabolism SBML MML
ote00440 Phosphonate and phosphinate metabolism SBML MML
ote00450 Selenoamino acid metabolism SBML MML
ote00460 (Undocumented) SBML MML
ote00471 D-Glutamine and D-glutamate metabolism SBML MML
ote00473 D-Alanine metabolism SBML MML
ote00480 Glutathione metabolism SBML MML
ote00500 Starch and sucrose metabolism SBML MML
ote00520 Amino sugar and nucleotide sugar metabolism SBML MML
ote00521 Streptomycin biosynthesis SBML MML
ote00523 Polyketide sugar unit biosynthesis SBML MML
ote00530 (Undocumented) SBML MML
ote00540 Lipopolysaccharide biosynthesis SBML MML
ote00550 Peptidoglycan biosynthesis SBML MML
ote00561 Glycerolipid metabolism SBML MML
ote00562 Inositol phosphate metabolism SBML MML
ote00564 Glycerophospholipid metabolism SBML MML
ote00590 Arachidonic acid metabolism SBML MML
ote00600 Sphingolipid metabolism SBML MML
ote00620 Pyruvate metabolism SBML MML
ote00624 1- and 2-Methylnaphthalene degradation SBML MML
ote00626 Naphthalene and anthracene degradation SBML MML
ote00630 Glyoxylate and dicarboxylate metabolism SBML MML
ote00631 1,2-Dichloroethane degradation SBML MML
ote00632 (Undocumented) SBML MML
ote00640 Propanoate metabolism SBML MML
ote00641 3-Chloroacrylic acid degradation SBML MML
ote00650 Butanoate metabolism SBML MML
ote00660 C5-Branched dibasic acid metabolism SBML MML
ote00670 One carbon pool by folate SBML MML
ote00680 Methane metabolism SBML MML
ote00710 (Undocumented) SBML MML
ote00720 (Undocumented) SBML MML
ote00730 Thiamine metabolism SBML MML
ote00740 Riboflavin metabolism SBML MML
ote00750 Vitamin B6 metabolism SBML MML
ote00760 Nicotinate and nicotinamide metabolism SBML MML
ote00770 Pantothenate and CoA biosynthesis SBML MML
ote00780 Biotin metabolism SBML MML
ote00790 Folate biosynthesis SBML MML
ote00791 Atrazine degradation SBML MML
ote00860 Porphyrin and chlorophyll metabolism SBML MML
ote00900 Terpenoid backbone biosynthesis SBML MML
ote00903 (Undocumented) SBML MML
ote00906 Carotenoid biosynthesis SBML MML
ote00910 Nitrogen metabolism SBML MML
ote00920 Sulfur metabolism SBML MML
ote00930 Caprolactam degradation SBML MML
ote00940 (Undocumented) SBML MML
ote00941 (Undocumented) SBML MML
ote00950 (Undocumented) SBML MML
ote00960 (Undocumented) SBML MML
ote00970 Aminoacyl-tRNA biosynthesis SBML MML
ote00982 (Undocumented) SBML MML
ote00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.