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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism olu: Ostreococcus lucimarinus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
olu00010 Glycolysis / Gluconeogenesis SBML MML
olu00020 Citrate cycle (TCA cycle) SBML MML
olu00030 Pentose phosphate pathway SBML MML
olu00040 Pentose and glucuronate interconversions SBML MML
olu00051 Fructose and mannose metabolism SBML MML
olu00052 Galactose metabolism SBML MML
olu00053 Ascorbate and aldarate metabolism SBML MML
olu00061 Fatty acid biosynthesis SBML MML
olu00062 Fatty acid elongation in mitochondria SBML MML
olu00071 Fatty acid metabolism SBML MML
olu00100 (Undocumented) SBML MML
olu00120 (Undocumented) SBML MML
olu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
olu00220 (Undocumented) SBML MML
olu00230 Purine metabolism SBML MML
olu00240 Pyrimidine metabolism SBML MML
olu00251 (Undocumented) SBML MML
olu00252 (Undocumented) SBML MML
olu00260 Glycine, serine and threonine metabolism SBML MML
olu00271 (Undocumented) SBML MML
olu00272 (Undocumented) SBML MML
olu00280 Valine, leucine and isoleucine degradation SBML MML
olu00281 Geraniol degradation SBML MML
olu00290 Valine, leucine and isoleucine biosynthesis SBML MML
olu00300 Lysine biosynthesis SBML MML
olu00310 Lysine degradation SBML MML
olu00330 Arginine and proline metabolism SBML MML
olu00340 Histidine metabolism SBML MML
olu00350 Tyrosine metabolism SBML MML
olu00360 Phenylalanine metabolism SBML MML
olu00361 gamma-Hexachlorocyclohexane degradation SBML MML
olu00363 Bisphenol A degradation SBML MML
olu00364 Fluorobenzoate degradation SBML MML
olu00380 Tryptophan metabolism SBML MML
olu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
olu00401 Novobiocin biosynthesis SBML MML
olu00410 beta-Alanine metabolism SBML MML
olu00430 Taurine and hypotaurine metabolism SBML MML
olu00440 Phosphonate and phosphinate metabolism SBML MML
olu00450 Selenoamino acid metabolism SBML MML
olu00480 Glutathione metabolism SBML MML
olu00500 Starch and sucrose metabolism SBML MML
olu00510 (Undocumented) SBML MML
olu00520 Amino sugar and nucleotide sugar metabolism SBML MML
olu00521 Streptomycin biosynthesis SBML MML
olu00523 Polyketide sugar unit biosynthesis SBML MML
olu00530 (Undocumented) SBML MML
olu00540 Lipopolysaccharide biosynthesis SBML MML
olu00550 Peptidoglycan biosynthesis SBML MML
olu00561 Glycerolipid metabolism SBML MML
olu00562 Inositol phosphate metabolism SBML MML
olu00564 Glycerophospholipid metabolism SBML MML
olu00565 Ether lipid metabolism SBML MML
olu00590 Arachidonic acid metabolism SBML MML
olu00591 Linoleic acid metabolism SBML MML
olu00592 alpha-Linolenic acid metabolism SBML MML
olu00600 Sphingolipid metabolism SBML MML
olu00620 Pyruvate metabolism SBML MML
olu00624 1- and 2-Methylnaphthalene degradation SBML MML
olu00626 Naphthalene and anthracene degradation SBML MML
olu00627 1,4-Dichlorobenzene degradation SBML MML
olu00630 Glyoxylate and dicarboxylate metabolism SBML MML
olu00632 (Undocumented) SBML MML
olu00640 Propanoate metabolism SBML MML
olu00641 3-Chloroacrylic acid degradation SBML MML
olu00650 Butanoate metabolism SBML MML
olu00660 C5-Branched dibasic acid metabolism SBML MML
olu00670 One carbon pool by folate SBML MML
olu00680 Methane metabolism SBML MML
olu00710 (Undocumented) SBML MML
olu00720 (Undocumented) SBML MML
olu00730 Thiamine metabolism SBML MML
olu00740 Riboflavin metabolism SBML MML
olu00750 Vitamin B6 metabolism SBML MML
olu00760 Nicotinate and nicotinamide metabolism SBML MML
olu00770 Pantothenate and CoA biosynthesis SBML MML
olu00780 Biotin metabolism SBML MML
olu00785 Lipoic acid metabolism SBML MML
olu00790 Folate biosynthesis SBML MML
olu00791 Atrazine degradation SBML MML
olu00860 Porphyrin and chlorophyll metabolism SBML MML
olu00900 Terpenoid backbone biosynthesis SBML MML
olu00903 (Undocumented) SBML MML
olu00906 Carotenoid biosynthesis SBML MML
olu00910 Nitrogen metabolism SBML MML
olu00920 Sulfur metabolism SBML MML
olu00930 Caprolactam degradation SBML MML
olu00950 (Undocumented) SBML MML
olu00960 (Undocumented) SBML MML
olu00970 Aminoacyl-tRNA biosynthesis SBML MML
olu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
olu00982 (Undocumented) SBML MML
olu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.